Mercurial > repos > fubar > jbrowse2
changeset 113:878c27dfea9d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 45375b64cbc99173525a2b374d71a13e650ce1b0
| author | bgruening |
|---|---|
| date | Sun, 28 Jul 2024 02:42:43 +0000 |
| parents | 56f9a6e0fe80 |
| children | 75f01bd05bd8 |
| files | autogenJB2.py jbrowse2.xml macros.xml |
| diffstat | 3 files changed, 8 insertions(+), 3 deletions(-) [+] |
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--- a/autogenJB2.py Thu Jul 04 08:40:21 2024 +0000 +++ b/autogenJB2.py Sun Jul 28 02:42:43 2024 +0000 @@ -92,6 +92,11 @@ # foo.paf must have a foo_paf.fasta or fasta.gz to match tnames = [x[2] for x in listtracks] texts = [x[1] for x in listtracks] + if len(listtracks) == 0: + sys.stderr.write( + "Please add at least one track (bam,bed,bigwig,blastxml,cram,gff,hic,maf,paf or vcf) to the collection. No suitable track files for autogenJB2 - nothing to process" + ) + sys.exit(5) for i, track in enumerate(listtracks): track_conf = { "trackfiles": [], @@ -224,5 +229,5 @@ # jc.text_index() not sure what broke here. else: sys.stderr.write( - "Collection has no suitable trackfiles for autogenJB2 - nothing to process" + "Please add a fasta genome reference to the collection. No suitable reference fasta for autogenJB2 - nothing to process" )