Mercurial > repos > fubar > jbrowse2

changeset 21:8e34214ccee4 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit aa26b35c213b2ea7c6bb1ab800afc7e03a82508d
author fubar
date Tue, 30 Jan 2024 09:56:51 +0000
parents 9c7aa5885721
children 2ddd41a0c2d5
files jbrowse2.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/jbrowse2.xml	Tue Jan 30 07:49:23 2024 +0000
+++ b/jbrowse2.xml	Tue Jan 30 09:56:51 2024 +0000
@@ -235,8 +235,8 @@
                         <option value="gene_calls" selected="true">GFF/GFF3/BED feature track</option>
                         <option value="hic">HiC (compressed binary) track. Existing cool format must be converted to binary hic - hic_matrix will NOT work.</option>
                         <option value="maf">Multiple alignment format track. Reference name must match the MAF name exactly to work correctly</option>
+                        <option value="paf">PAF - approximate mapping positions between two set of sequences</option>
                         <option value="sparql">SPARQL</option>
-                        <option value="synteny">Synteny track with PAF data</option>
                        <option value="vcf">VCF SNP annotation</option>
                     </param>
                     <when value="blast">
@@ -302,7 +302,7 @@
                         <expand macro="input_conditional" label="BigWig Track Data" format="bigwig" />
                         <expand macro="track_visibility" />
                     </when>
-                    <when value="synteny">
+                    <when value="paf">
                         <param label="Comparison genome sequence" help="Paf must use this as the reference to map the real reference sequence"
                             format="fasta"
                             name="synteny_genome"