Mercurial > repos > fubar > jbrowse2
changeset 116:b55199c56abd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse2 commit 7b9eed035bb929af8907bb9f810b0c201562cdf2
| author | bgruening |
|---|---|
| date | Wed, 28 Aug 2024 07:34:43 +0000 |
| parents | 4aec47f872b3 |
| children | c4b77883c0a7 |
| files | jbrowse2.xml macros.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/jbrowse2.xml Tue Aug 20 09:10:27 2024 +0000 +++ b/jbrowse2.xml Wed Aug 28 07:34:43 2024 +0000 @@ -105,7 +105,7 @@ </metadata> </genome> #else - <genome path="$assembly.reference_genome.genome" label="${assembly.reference_genome.genome.name}" useuri="no"> + <genome path="$assembly.reference_genome.genome" label="${assembly.reference_genome.genome.element_identifier}" useuri="no"> <metadata> <dataset id="${__app__.security.encode_id($assembly.reference_genome.genome.id)}" @@ -171,7 +171,7 @@ <track cat="${tg.category}" format="${track.data_format.data_format_select}" visibility="${track.data_format.track_visibility}"> <files> #for $dataset in $track.data_format.useuri.annotation: - <trackFile path="${dataset}" ext="${dataset.ext}" label="${dataset.name}" useuri="no"> + <trackFile path="${dataset}" ext="${dataset.ext}" label="${dataset.element_identifier}" useuri="no"> <metadata> <dataset id="${__app__.security.encode_id($dataset.id)}" hid="${dataset.hid}" size="${dataset.get_size(nice_size=True)}"
--- a/macros.xml Tue Aug 20 09:10:27 2024 +0000 +++ b/macros.xml Wed Aug 28 07:34:43 2024 +0000 @@ -25,7 +25,7 @@ </requirements> </xml> <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="creators"> <creator> <person givenName="Helena" familyName="Rasche" url="https://github.com/hexylena"/> @@ -344,9 +344,9 @@ </sanitizer> </param> <param name="autoscale" type="select" label="Autoscale type"> - <option value="local" selected="true">Local</option> <option value="global">Global</option> - <option value="globalsd">Global ± 3σ</option> + <option value="globalsd" selected="true">Global ± 3σ</option> + <option value="local">Local</option> <option value="localsd">Local ± 3σ</option> </param> <param name="resolution" type="integer" value="1" label="Resolution"/>