Mercurial > repos > fubar > jbrowse2

changeset 44:bea0916e1080 draft

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planemo upload for repository https://github.com/usegalaxy-eu/temporary-tools/tree/master/jbrowse2 commit 015c77d802595a85f78739ee2316b452c519c796-dirty
author fubar
date Fri, 01 Mar 2024 04:44:52 +0000
parents 7e14b3f1f8e1
children 0ec526d2d8c1
files jbrowse2.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/jbrowse2.py	Fri Mar 01 02:44:25 2024 +0000
+++ b/jbrowse2.py	Fri Mar 01 04:44:52 2024 +0000
@@ -477,7 +477,7 @@
     def make_assembly(self, fapath, gname):
 
         faname = gname + ".fa.gz"
-        fadest = os.path.join(self.outdir, faname)
+        fadest = os.path.realpath(os.path.join(self.outdir, faname))
         cmd = "bgzip -i -c %s -I %s.gzi > %s && samtools faidx %s" % (
             fapath,
             fadest,