Mercurial > repos > fubar > lifelines_km_cph_tool
diff lifelines_tool/test-data/readme_sample @ 2:dd5e65893cb8 draft default tip
add survival and collapsed life table outputs suggested by Wolfgang
| author | fubar |
|---|---|
| date | Thu, 10 Aug 2023 22:52:45 +0000 |
| parents | 232b874046a7 |
| children |
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--- a/lifelines_tool/test-data/readme_sample Thu Aug 10 07:15:22 2023 +0000 +++ b/lifelines_tool/test-data/readme_sample Thu Aug 10 22:52:45 2023 +0000 @@ -1,5 +1,5 @@ -## Lifelines tool starting. -Using data header = Index(['Unnamed: 0', 'week', 'arrest', 'fin', 'age', 'race', 'wexp', 'mar', +## Lifelines tool +Input data header = Index(['Unnamed: 0', 'week', 'arrest', 'fin', 'age', 'race', 'wexp', 'mar', 'paro', 'prio'], dtype='object') time column = week status column = arrest Logrank test for race - 0 vs 1 @@ -14,6 +14,66 @@ --- test_statistic p -log2(p) 0.58 0.45 1.16 +#### Survival table using time week and event arrest + removed observed censored entrance at_risk +event_at +0.0 0 0 0 432 432 +1.0 1 1 0 0 432 +2.0 1 1 0 0 431 +3.0 1 1 0 0 430 +4.0 1 1 0 0 429 +5.0 1 1 0 0 428 +6.0 1 1 0 0 427 +7.0 1 1 0 0 426 +8.0 5 5 0 0 425 +9.0 2 2 0 0 420 +10.0 1 1 0 0 418 +11.0 2 2 0 0 417 +12.0 2 2 0 0 415 +13.0 1 1 0 0 413 +14.0 3 3 0 0 412 +15.0 2 2 0 0 409 +16.0 2 2 0 0 407 +17.0 3 3 0 0 405 +18.0 3 3 0 0 402 +19.0 2 2 0 0 399 +20.0 5 5 0 0 397 +21.0 2 2 0 0 392 +22.0 1 1 0 0 390 +23.0 1 1 0 0 389 +24.0 4 4 0 0 388 +25.0 3 3 0 0 384 +26.0 3 3 0 0 381 +27.0 2 2 0 0 378 +28.0 2 2 0 0 376 +30.0 2 2 0 0 374 +31.0 1 1 0 0 372 +32.0 2 2 0 0 371 +33.0 2 2 0 0 369 +34.0 2 2 0 0 367 +35.0 4 4 0 0 365 +36.0 3 3 0 0 361 +37.0 4 4 0 0 358 +38.0 1 1 0 0 354 +39.0 2 2 0 0 353 +40.0 4 4 0 0 351 +42.0 2 2 0 0 347 +43.0 4 4 0 0 345 +44.0 2 2 0 0 341 +45.0 2 2 0 0 339 +46.0 4 4 0 0 337 +47.0 1 1 0 0 333 +48.0 2 2 0 0 332 +49.0 5 5 0 0 330 +50.0 3 3 0 0 325 +52.0 322 4 318 0 322 +#### Life table using time week and event arrest + removed observed censored at_risk +event_at +(-0.001, 13.844] 20 20 0 432 +(13.844, 27.687] 36 36 0 412 +(27.687, 41.531] 29 29 0 376 +(41.531, 55.374] 347 29 318 347 ### Lifelines test of Proportional Hazards results with prio, age, race, paro, mar, fin as covariates on KM and CPH in lifelines test <lifelines.CoxPHFitter: fitted with 432 total observations, 318 right-censored observations> duration col = 'week' @@ -22,7 +82,7 @@ number of observations = 432 number of events observed = 114 partial log-likelihood = -659.00 - time fit was run = 2023-08-10 05:49:04 UTC + time fit was run = 2023-08-10 12:00:14 UTC --- coef exp(coef) se(coef) coef lower 95% coef upper 95% exp(coef) lower 95% exp(coef) upper 95%