view planemo_lint/planemo_lint.xml @ 1:0183cad9d13b draft

planemo upload

<tool name="planemo_lint" id="planemo_lint" version="0.75.20" profile="22.05">
  <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
  <!--Created by [e-mail] at 05/02/2024 14:19:29 using the Galaxy Tool Factory.-->
  <description></description>
  <requirements>
    <requirement version="0.75.20" type="package">planemo</requirement>
  </requirements>
  <version_command><![CDATA[echo "0.75.20"]]></version_command>
  <command><![CDATA[bash
'$runme'
$Toolshed_archive_to_be_linted
$lint_output]]></command>
  <configfiles>
    <configfile name="runme"><![CDATA[#raw
cp $1 foo.tar 
tar -xvf foo.tar
TOOLNAME=`find . -name "*.xml"`
echo "$$$$$TOOLNAME = $TOOLNAME" > $2
planemo lint $TOOLNAME >> $2
#end raw]]></configfile>
  </configfiles>
  <inputs>
    <param name="Toolshed_archive_to_be_linted" type="data" optional="false" label="Toolshed archive to be linted" help="" format="tgz" multiple="false"/>
  </inputs>
  <outputs>
    <data name="lint_output" format="txt" label="lint_output" hidden="false"/>
  </outputs>
  <tests>
    <test>
      <output name="lint_output" value="lint_output_sample" compare="diff" lines_diff="5"/>
      <param name="Toolshed_archive_to_be_linted" value="Toolshed_archive_to_be_linted_sample"/>
    </test>
  </tests>
  <help><![CDATA[
 **What it Does**
  ]]></help>
  <citations>
    <citation type="doi">10.1093/bioinformatics/bts573</citation>
  </citations>
</tool>