view pyrev_pos_test/pyrev_pos_test.xml @ 1:0183cad9d13b draft

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<tool name="pyrev_pos_test" id="pyrev_pos_test" version="0.01" profile="22.05">
  <!--Source in git at: https://github.com/fubar2/galaxy_tf_overlay-->
  <!--Created by [e-mail] at 22/02/2024 10:27:18 using the Galaxy Tool Factory.-->
  <description></description>
  <requirements/>
  <version_command><![CDATA[echo "0.01"]]></version_command>
  <command><![CDATA[python
'$runme'
$Input_text_file_to_be_reversed
$pyrev_positionalparse_output]]></command>
  <configfiles>
    <configfile name="runme"><![CDATA[#raw
## reverse order of text by row
## ToolFactory demonstration
## positional parameters
import sys
inp = sys.argv[1]
outp = sys.argv[2]
i = open(inp,'r').readlines()
o = open(outp,'w')
for row in i:
  rs = row.rstrip()
  rs = list(rs)
  rs.reverse()
  o.write(''.join(rs))
  o.write('\n')
o.close()
#end raw]]></configfile>
  </configfiles>
  <inputs>
    <param name="Input_text_file_to_be_reversed" type="data" optional="false" label="Input text file to be reversed" help="" format="txt" multiple="false"/>
  </inputs>
  <outputs>
    <data name="pyrev_positionalparse_output" format="txt" label="pyrev_positionalparse_output" hidden="false"/>
  </outputs>
  <tests>
    <test>
      <output name="pyrev_positionalparse_output" value="pyrev_positionalparse_output_sample" compare="diff" lines_diff="0"/>
      <param name="Input_text_file_to_be_reversed" value="Input_text_file_to_be_reversed_sample"/>
    </test>
  </tests>
  <help><![CDATA[
 **What it Does**
  ]]></help>
  <citations>
    <citation type="doi">10.1093/bioinformatics/bts573</citation>
  </citations>
</tool>