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planemo upload for repository https://github.com/fubar2/microsatbed commit d952bc313f408735456747c3d33e09a3170c8f59-dirty
author fubar
date Mon, 15 Jul 2024 03:13:15 +0000
parents a633c1c45da3
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11:a633c1c45da3 12:10377717e88a
1 ## microsatellites to bed features 1 ## microsatellites to bed features
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3 **Convert short repetitive sequences to bed features** 3 **Convert short repetitive sequences to bed features**
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5 Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence. 5 Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence.
6 A microsatellite pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length. 6 A microsatellite pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length.
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8 This tool allows microsatellite and related features to be selected from a fasta sequence input file, and output into a single bed track, suitable for viewing in a genome browser such as JBrowse2. 8 This tool allows microsatellite and related features to be selected from a fasta sequence input file, and output into a single bed track, suitable for viewing in a genome browser such as JBrowse2.