Mercurial > repos > fubar > microsatbed
comparison microsatbed.xml @ 23:45f690db0eaf draft
planemo upload for repository https://github.com/fubar2/microsatbed commit d952bc313f408735456747c3d33e09a3170c8f59-dirty
| author | fubar |
|---|---|
| date | Wed, 17 Jul 2024 23:19:12 +0000 |
| parents | b5acf60b903d |
| children | 26e9575c2c83 |
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| 22:b5acf60b903d | 23:45f690db0eaf |
|---|---|
| 90 <when value="ALL"> | 90 <when value="ALL"> |
| 91 <param name="subset" type="select" multiple="true" optional="false" label="Select at least 1 specific motif length to report" | 91 <param name="subset" type="select" multiple="true" optional="false" label="Select at least 1 specific motif length to report" |
| 92 help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more"> | 92 help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more"> |
| 93 <option value="DI" selected="true">All dimers (AC,AG,AT,...)</option> | 93 <option value="DI" selected="true">All dimers (AC,AG,AT,...)</option> |
| 94 <option value="TRI">All trimers (ACG,..)</option> | 94 <option value="TRI">All trimers (ACG,..)</option> |
| 95 <option value="TETRA">All tetramers (ACGT,..)</option> | |
| 95 <option value="PENTA">All pentamers (ACGTC,..)</option> | 96 <option value="PENTA">All pentamers (ACGTC,..)</option> |
| 96 <option value="HEXA">All hexamers (ACGTCG,..)</option> | 97 <option value="HEXA">All hexamers (ACGTCG,..)</option> |
| 97 <option value="MONO">All monomers (A,C...). Warning! Can produce overwhelming numbers of bed features</option> | 98 <option value="MONO">All monomers (A,C...). Warning! Can produce overwhelming numbers of bed features</option> |
| 98 </param> | 99 </param> |
| 99 </when> | 100 </when> |
| 100 <when value="ALLBW"> | 101 <when value="ALLBW"> |
| 101 <param name="subset" type="select" multiple="true" optional="false" label="Select at least 1 specific motif length to report" | 102 <param name="subset" type="select" multiple="true" optional="false" label="Select at least 1 specific motif length to report" |
| 102 help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more"> | 103 help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more"> |
| 103 <option value="DI" selected="true">All dimers (AC,AG,AT,...)</option> | 104 <option value="DI" selected="true">All dimers (AC,AG,AT,...)</option> |
| 104 <option value="TRI">All trimers (ACG,..)</option> | 105 <option value="TRI">All trimers (ACG,..)</option> |
| 106 <option value="TETRA">All tetramers (ACGT,..)</option> | |
| 105 <option value="PENTA">All pentamers (ACGTC,..)</option> | 107 <option value="PENTA">All pentamers (ACGTC,..)</option> |
| 106 <option value="HEXA">All hexamers (ACGTCG,..)</option> | 108 <option value="HEXA">All hexamers (ACGTCG,..)</option> |
| 107 <option value="MONO">All monomers (A,C...). Warning! Can produce overwhelming numbers of bed features</option> | 109 <option value="MONO">All monomers (A,C...). Warning! Can produce overwhelming numbers of bed features</option> |
| 108 </param> | 110 </param> |
| 109 <param type="integer" min="5" name="winwidth" label="Window with for estimating STR bigwig density" value="128"/> | 111 <param type="integer" min="5" name="winwidth" label="Window with for estimating STR bigwig density" value="128"/> |