Mercurial > repos > fubar > microsatbed
comparison microsatbed.xml @ 18:607620f93b4c draft
planemo upload for repository https://github.com/fubar2/microsatbed commit d952bc313f408735456747c3d33e09a3170c8f59-dirty
| author | fubar |
|---|---|
| date | Wed, 17 Jul 2024 06:19:22 +0000 |
| parents | 264d79548d19 |
| children | db5523378e5c |
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| 17:264d79548d19 | 18:607620f93b4c |
|---|---|
| 24 --fasta '${reference_genome.fasta.fields.path}' | 24 --fasta '${reference_genome.fasta.fields.path}' |
| 25 #end if | 25 #end if |
| 26 --bed '$bed' | 26 --bed '$bed' |
| 27 #if $mode_cond.mode == "SPECIFIC": | 27 #if $mode_cond.mode == "SPECIFIC": |
| 28 --specific '$mode_cond.specific' | 28 --specific '$mode_cond.specific' |
| 29 #else: | |
| 30 #if "MONO" in $mode_cond.subset: | |
| 31 --mono | |
| 32 #end if | |
| 33 #if "DI" in $mode_cond.subset: | |
| 34 --di | |
| 35 #end if | |
| 36 #if "TRI" in $mode_cond.subset: | |
| 37 --tri | |
| 38 #end if | |
| 39 #if "TETRA" in $mode_cond.subset: | |
| 40 --tetra | |
| 41 #end if | |
| 42 #if "PENTA" in $mode_cond.subset: | |
| 43 --penta | |
| 44 #end if | |
| 45 #if "HEXA" in $mode_cond.subset: | |
| 46 --hexa | |
| 47 #end if | |
| 48 #end if | |
| 29 --monomin '$monomin' | 49 --monomin '$monomin' |
| 30 --dimin '$dimin' | 50 --dimin '$dimin' |
| 31 --trimin '$trimin' | 51 --trimin '$trimin' |
| 32 --tetramin '$tetramin' | 52 --tetramin '$tetramin' |
| 33 --pentamin '$pentamin' | 53 --pentamin '$pentamin' |
| 34 --hexamin '$hexamin' | 54 --hexamin '$hexamin' |
| 35 #else: | |
| 36 #if "MONO" in $mode_cond.subset: | |
| 37 --mono | |
| 38 #end if | |
| 39 #if "DI" in $mode_cond.subset: | |
| 40 --di | |
| 41 #end if | |
| 42 #if "TRI" in $mode_cond.subset: | |
| 43 --tri | |
| 44 #end if | |
| 45 #if "TETRA" in $mode_cond.subset: | |
| 46 --tetra | |
| 47 #end if | |
| 48 #if "PENTA" in $mode_cond.subset: | |
| 49 --penta | |
| 50 #end if | |
| 51 #if "HEXA" in $mode_cond.subset: | |
| 52 --hexa | |
| 53 #end if | |
| 54 --monomin '$monomin' | |
| 55 --dimin '$dimin' | |
| 56 --trimin '$trimin' | |
| 57 --tetramin '$tetramin' | |
| 58 --pentamin '$pentamin' | |
| 59 --hexamin '$hexamin' | |
| 60 #end if | |
| 61 #end if | 55 #end if |
| 62 ]]></command> | 56 ]]></command> |
| 63 <inputs> | 57 <inputs> |
| 64 <conditional name="reference_genome"> | 58 <conditional name="reference_genome"> |
| 65 <param name="genome_type_select" type="select" label="Select a source for fasta sequences to be searched for STRs" help="Options are to choose a built-in genome, or choose any history fasta file"> | 59 <param name="genome_type_select" type="select" label="Select a source for fasta sequences to be searched for STRs" help="Options are to choose a built-in genome, or choose any history fasta file"> |