comparison README.md @ 9:e9bba24ff909 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty

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## microsatellites to bed features

A Galaxy tool for building some of the [NIH MARBL T2T assembly polishing](https://github.com/marbl/training) tools as Galaxy workflows.

 **Convert short repetitive sequences to bed features**

 Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence.
 A microsatellite pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length.
 
 This tool allows microsatellite and related features to be selected from a fasta sequence input file, and output into a single bed track, suitable for viewing in a genome browser such as JBrowse2.

 All motifs of selected lengths can be reported as individual features in the output bed file, or specific motifs can be provided and all
 others will be ignored. In all cases, a minimum required number of repeats can be specified. For example, requiring 2 or more repeats of the trimer *ACG* will report 

9:e9bba24ff909

## microsatellites to bed features

 **Convert short repetitive sequences to bed features**

 Microsatellites refer to short DNA patterns that are repeated.
 A pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length.
 
 This tool allows microsatellite and related features to be selected from a fasta sequence input file, and output into a single bed track, suitable for viewing in a genome browser such as JBrowse2.

 All motifs of selected lengths can be reported as individual features in the output bed file, or specific motifs can be provided and all
 others will be ignored. In all cases, a minimum required number of repeats can be specified. For example, requiring 2 or more repeats of the trimer *ACG* will report