# HG changeset patch
# User fubar
# Date 1721197162 0
# Node ID 607620f93b4c4077db87de58b9a63458d545209d
# Parent  264d79548d1914328299c303a8e9b512854c7ca9
planemo upload for repository https://github.com/fubar2/microsatbed commit d952bc313f408735456747c3d33e09a3170c8f59-dirty

diff -r 264d79548d19 -r 607620f93b4c README.md
--- a/README.md	Wed Jul 17 06:08:33 2024 +0000
+++ b/README.md	Wed Jul 17 06:19:22 2024 +0000
@@ -1,4 +1,5 @@
 ## microsatellites to bed features
+
  **Convert short repetitive sequences to bed features**
 
  Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence.
@@ -49,4 +50,4 @@
    Pytrf is a lightweight Python C extension for identification of tandem repeats. The pytrf enables to fastly identify both exact or perfect SSRs.
    It also can find generic tandem repeats with any size of motif, such as with maximum motif length of 100 bp. Additionally, it has capability of finding approximate or imperfect tandem repeats*
 
- 
+ 
\ No newline at end of file
diff -r 264d79548d19 -r 607620f93b4c microsatbed.xml
--- a/microsatbed.xml	Wed Jul 17 06:08:33 2024 +0000
+++ b/microsatbed.xml	Wed Jul 17 06:19:22 2024 +0000
@@ -26,12 +26,6 @@
     --bed '$bed'
     #if $mode_cond.mode == "SPECIFIC":
     --specific '$mode_cond.specific'
-    --monomin '$monomin'
-    --dimin '$dimin'
-    --trimin '$trimin'
-    --tetramin '$tetramin'
-    --pentamin '$pentamin'
-    --hexamin '$hexamin'
     #else:
       #if "MONO" in $mode_cond.subset:
       --mono
@@ -51,13 +45,13 @@
       #if "HEXA" in $mode_cond.subset:
       --hexa
       #end if
-      --monomin '$monomin'
-      --dimin '$dimin'
-      --trimin '$trimin'
-      --tetramin '$tetramin'
-      --pentamin '$pentamin'
-      --hexamin '$hexamin'
     #end if
+    --monomin '$monomin'
+    --dimin '$dimin'
+    --trimin '$trimin'
+    --tetramin '$tetramin'
+    --pentamin '$pentamin'
+    --hexamin '$hexamin'
   #end if
 ]]></command>
   <inputs>