Mercurial > repos > fubar > microsatbed
changeset 9:e9bba24ff909 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty
| author | fubar |
|---|---|
| date | Sat, 13 Jul 2024 13:18:53 +0000 |
| parents | 8325faed40b2 |
| children | 281592957c73 |
| files | README.md |
| diffstat | 1 files changed, 3 insertions(+), 5 deletions(-) [+] |
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--- a/README.md Sat Jul 13 13:09:58 2024 +0000 +++ b/README.md Sat Jul 13 13:18:53 2024 +0000 @@ -1,11 +1,9 @@ ## microsatellites to bed features -A Galaxy tool for building some of the [NIH MARBL T2T assembly polishing](https://github.com/marbl/training) tools as Galaxy workflows. - **Convert short repetitive sequences to bed features** - Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence. - A microsatellite pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length. + Microsatellites refer to short DNA patterns that are repeated. + A pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length. This tool allows microsatellite and related features to be selected from a fasta sequence input file, and output into a single bed track, suitable for viewing in a genome browser such as JBrowse2. @@ -52,4 +50,4 @@ Pytrf is a lightweight Python C extension for identification of tandem repeats. The pytrf enables to fastly identify both exact or perfect SSRs. It also can find generic tandem repeats with any size of motif, such as with maximum motif length of 100 bp. Additionally, it has capability of finding approximate or imperfect tandem repeats* - \ No newline at end of file +