changeset 13:ed885140970f draft

Uploaded

--- a/README.md	Mon Jul 15 03:13:15 2024 +0000
+++ b/README.md	Wed Jul 17 04:11:55 2024 +0000
@@ -1,6 +1,6 @@
 ## microsatellites to bed features
 
-**Convert short repetitive sequences to bed features**
+ **Convert short repetitive sequences to bed features**
 
  Microsatellites are usually defined as repeated short DNA patterns in an unbroken sequence.
  A microsatellite pattern or *motif* can be any combination nucleotides, typically from 1 to 6nt in length.
@@ -50,4 +50,4 @@
    Pytrf is a lightweight Python C extension for identification of tandem repeats. The pytrf enables to fastly identify both exact or perfect SSRs.
    It also can find generic tandem repeats with any size of motif, such as with maximum motif length of 100 bp. Additionally, it has capability of finding approximate or imperfect tandem repeats*
 
- 
+ 
\ No newline at end of file

--- a/microsatbed.xml	Mon Jul 15 03:13:15 2024 +0000
+++ b/microsatbed.xml	Wed Jul 17 04:11:55 2024 +0000
@@ -97,7 +97,7 @@
     <when value="SPECIFIC">
       <param name="specific" type="text" label="Supply a specific motif pattern. Separate multiple patterns with commas such as GA,GC" 
          help="Make bed features only for the nominated specific motifs." optional="false"/>
-      <param name="minreps" type="integer" value="2" min="2" label="Minimum number of repeats of each of these motifs to report" 
+      <param name="minreps" type="integer" value="2" min="1" label="Minimum number of repeats of each of these motifs to report" 
         help="Short tandem repeats require 2 or more consecutive motifs by definition. WARNING: If monomers are included, every single matching base will be reported as a STR if minimum repeats = 1!"
         optional="false"/>
     </when>