diff microsatbed.xml @ 11:c39202869825 draft

planemo upload for repository https://github.com/fubar2/microsatbed commit bfb57ff3a931bc3f3d3549707f7bcf1f561c84c6

--- a/microsatbed.xml	Tue Aug 13 05:33:14 2024 +0000
+++ b/microsatbed.xml	Tue Aug 13 05:57:05 2024 +0000
@@ -1,5 +1,5 @@
 
-<tool id="microsatbedfubar" name="STR to bed" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
+<tool id="microsatbed" name="STR to bed" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
     <description>Short Tandem Repeats to bed features from fasta</description>
     <macros>
         <token name="@TOOL_VERSION@">1.3.2</token>
@@ -118,7 +118,7 @@
         <param name="hexamin" type="integer" min="2" value="2" label="Minimum repeats required for hexamers"/>
     </inputs>
     <outputs>
-      <data name="bed" format="bed" label="STR">
+      <data name="bed" format="bed" label="STR on $reffa.element_identifier">
         <change_format>
             <when input="mode_cond.outformat" value="gff" format="gff"/>
             <when input="mode_cond.outformat" value="csv" format="csv"/>
@@ -204,8 +204,8 @@
         </test>
         <test expect_num_outputs="1">
             <conditional name="reference_genome">
-                <param name="genome_type_select" value="indexed"/>
-                <param name="reffa" value="hgtest"/>
+                <param name="genome_type_select" value="history"/>
+                <param name="reffa" value="humsamp.fa"/>
             </conditional>
             <conditional name="mode_cond">
                 <param name="mode" value="SPECIFICBW"/>