Mercurial > repos > fubar > microsatbedfubar
view test-data/builtinnativetsv_sample @ 8:01c16e8fbc91 draft
planemo upload for repository https://github.com/fubar2/microsatbed commit 80a8c0db54b6e2cab9dfe7178b1e5b3b39592f2c-dirty
| author | fubar |
|---|---|
| date | Tue, 13 Aug 2024 04:50:47 +0000 |
| parents | f27be15cc58d |
| children |
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hpat1 507 526 TTTA 4 5 20 hpat1 1963 1974 CCCCAC 6 2 12 hpat1 2146 2163 AAAAAC 6 3 18 hpat1 3236 3247 TTTTTT 6 2 12 hpat1 4117 4128 GGCAGG 6 2 12 hpat1 5472 5483 TTTTTG 6 2 12 hpat1 5584 5595 AGCCCC 6 2 12 hpat1 7239 7250 GAAAAA 6 2 12 hpat1 8173 8184 AAAAAA 6 2 12 hpat1 8275 8302 A 1 28 28 hpat1 8303 8314 GAGAGA 6 2 12 hpat1 8744 8755 GGAGGT 6 2 12 hpat1 8828 8845 AGAAAA 6 3 18 hpat1 9495 9506 GGAGGT 6 2 12 hpat1 9571 9595 AAAAC 5 5 25 hpat1 11623 11634 AGGGAA 6 2 12 hpat1 11651 11662 AACAAC 6 2 12 hpat1 12486 12497 CCTCTG 6 2 12 hpat1 13457 13468 ACCCTA 6 2 12 hpat1 13471 13488 CCCTAA 6 3 18 hpat1 13489 13500 CCCCAA 6 2 12 hpat1 13501 13518 CCCCAG 6 3 18 hpat1 13523 13546 AACCCT 6 4 24 hpat1 13559 13582 CCCTAA 6 4 24 hpat1 13598 13609 ACCCTA 6 2 12 hpat1 13612 13635 ACCCTA 6 4 24 hpat1 13641 13658 AACCCC 6 3 18 hpat1 13659 13670 AACCCT 6 2 12 hpat1 13691 13708 ACCCTC 6 3 18 hpat1 13721 13744 AACCCC 6 4 24 hpat1 13747 13758 CCCAAC 6 2 12 hpat1 13767 13778 CTCACC 6 2 12 hpat1 14149 14164 GCCC 4 4 16 hpat1 14307 14318 GGCGCA 6 2 12 hpat1 14336 14347 GGCGCA 6 2 12 hpat1 14384 14395 GGCGCA 6 2 12 hpat1 14472 14483 GGGGGG 6 2 12 hpat1 16148 16159 GAGTGG 6 2 12 hpat1 16547 16558 CTGAGG 6 2 12 hpat1 17030 17041 CAGGCA 6 2 12 hpat1 18072 18083 GTCTGG 6 2 12 hpat1 18120 18131 TCGTCC 6 2 12 hpat1 18795 18806 GCAGGC 6 2 12 hpat1 19207 19218 TGCTCC 6 2 12 hpat1 20148 20159 GGTGGT 6 2 12 hpat1 22835 22846 GGGAGG 6 2 12 hpat1 22939 22950 AAGCCA 6 2 12 hpat1 24658 24669 AAAAAA 6 2 12 hpat1 25690 25701 ATTCAC 6 2 12 hpat1 26499 26510 CCCCTG 6 2 12 hpat1 29330 29341 CCTCCA 6 2 12 hpat1 30089 30100 CCAGGA 6 2 12 hpat1 31904 31915 GTGTGT 6 2 12 hpat1 32448 32459 GGAGGT 6 2 12 hpat1 32998 33009 TTTTCT 6 2 12 hpat1 35194 35205 GCCCAG 6 2 12 hpat1 35991 36002 CTCTCC 6 2 12 hpat1 36299 36310 TCTCTG 6 2 12 hpat1 36311 36338 TC 2 14 28 hpat1 36363 36374 TCTCTC 6 2 12 hpat1 37142 37153 AAAAAA 6 2 12 hpat1 37229 37240 ACACAC 6 2 12 hpat1 38874 38885 AAAAAA 6 2 12 hpat1 39406 39417 CATGTG 6 2 12 hpat1 39489 39500 TTCTAG 6 2 12 hpat1 39620 39642 T 1 23 23 hpat1 40503 40514 GTACCA 6 2 12 hpat1 43740 43764 TCCAT 5 5 25 hpat1 43807 43826 CACTC 5 4 20 hpat1 43965 43984 TCCAC 5 4 20 hpat1 44879 44903 TTCCA 5 5 25 hpat1 45344 45368 TCCAT 5 5 25 hpat1 45526 45545 CATTC 5 4 20 hpat1 45554 45573 TCCAT 5 4 20 hpat1 46948 46967 TCCAT 5 4 20 hpat1 47107 47131 TTCCA 5 5 25 hpat1 47141 47160 ATTCC 5 4 20 hpat1 47303 47322 TCCAC 5 4 20 hpat1 48673 48692 TCCAT 5 4 20 hpat1 48806 48825 ATTCC 5 4 20 hpat1 49681 49700 ATTCC 5 4 20 hpat1 49856 49875 ATTCC 5 4 20 hpat1 50315 50334 TCCAC 5 4 20 hpat1 50775 50794 TCCAT 5 4 20 hpat1 51153 51172 ATTCC 5 4 20 hpat1 52508 52519 GCCTTT 6 2 12 hpat1 53676 53687 TTTCAG 6 2 12 hpat1 55005 55016 AAAAAC 6 2 12 hpat1 58746 58757 GCTTAT 6 2 12 hpat1 59055 59066 TAGAAA 6 2 12 hpat1 61658 61669 GGAGGT 6 2 12 hpat1 61733 61747 AAA 3 5 15 hpat1 62761 62775 AAA 3 5 15 hpat1 63859 63874 AAAG 4 4 16 hpat1 65522 65533 TTTTTT 6 2 12 hpat1 67692 67703 CTCAGA 6 2 12 hpat1 68526 68537 TGCCTC 6 2 12 hpat1 68608 68622 TTT 3 5 15 hpat1 68851 68862 CAGCCT 6 2 12 hpat1 69176 69187 CCTTAT 6 2 12 hpat1 72054 72065 CTCTCC 6 2 12 hpat1 73588 73599 CAAATA 6 2 12 hpat1 73891 73924 AC 2 17 34 hpat1 74873 74884 TCTCTT 6 2 12 hpat1 76181 76192 TTTGTT 6 2 12 hpat1 77091 77106 ATAC 4 4 16 hpat1 77427 77441 TTT 3 5 15 hpat1 78001 78015 TTT 3 5 15 hpat1 80746 80757 TTTTCA 6 2 12 hpat1 80794 80805 CTCTCT 6 2 12 hpat1 81769 81780 CAAAAA 6 2 12 hpat1 82355 82369 TTT 3 5 15 hpat1 83934 83945 TAAATG 6 2 12 hpat1 84620 84631 TCAAAA 6 2 12 hpat1 86960 86975 TATA 4 4 16 hpat1 87245 87256 TTTCTG 6 2 12 hpat1 87483 87494 TTTTCC 6 2 12 hpat1 87622 87641 TC 2 10 20 hpat1 87642 87653 TGTGTG 6 2 12 hpat1 87657 87684 GT 2 14 28 hpat1 90387 90401 AAA 3 5 15 hpat1 91598 91609 CTAGAA 6 2 12 hpat1 92664 92675 AAGAAA 6 2 12 hpat1 92820 92831 TCAATG 6 2 12 hpat1 93618 93629 AACAAA 6 2 12 hpat1 95760 95771 ATCAGT 6 2 12 hpat1 97920 97931 GTTTTT 6 2 12 hpat1 98028 98052 T 1 25 25 hpat1 98115 98126 ACCTCC 6 2 12 hpat1 100821 100832 CCTGCC 6 2 12 hpat1 100974 100985 CCCCAC 6 2 12 hpat1 102825 102836 GGAGTT 6 2 12 hpat1 103863 103874 CAGAAA 6 2 12 hpat1 104935 104946 CTATCT 6 2 12 hpat1 105272 105283 TTCTTT 6 2 12 hpat1 105982 105993 AAAAAA 6 2 12 hpat1 106336 106347 CATTAA 6 2 12 hpat1 108698 108709 AACACA 6 2 12 hpat1 109407 109421 TTT 3 5 15 hpat1 109461 109472 AAAACA 6 2 12 hpat1 109842 109853 AAACAA 6 2 12 hpat1 109891 109902 TTAAAT 6 2 12 hpat1 110331 110342 CAGCAA 6 2 12 hpat1 110481 110492 AAGAAG 6 2 12 hpat1 111086 111100 TTT 3 5 15 hpat1 111899 111910 CATGTG 6 2 12 hpat1 111999 112010 TTTTTT 6 2 12 hpat1 112079 112090 ACCTCC 6 2 12 hpat1 112760 112771 AGAAAG 6 2 12 hpat1 113453 113464 GAAAAA 6 2 12 hpat1 113543 113563 A 1 21 21 hpat1 113689 113700 ATGTGT 6 2 12 hpat1 113844 113855 TTTGTT 6 2 12 hpat1 119637 119648 TGGTAC 6 2 12 hpat1 120465 120476 CTAGAA 6 2 12 hpat1 120548 120559 CACATG 6 2 12 hpat1 121012 121035 AAAT 4 6 24 hpat1 124025 124048 TTGT 4 6 24 hpat1 124049 124066 TGT 3 6 18 hpat1 124223 124234 TTTTTA 6 2 12 hpat1 124605 124616 GAAAAA 6 2 12 hpat1 125716 125727 AAAATT 6 2 12 hpat1 125753 125764 CTAAAA 6 2 12 hpat1 125768 125779 CAAAAA 6 2 12 hpat1 125885 125896 TTTTTT 6 2 12 hpat1 125906 125923 TTT 3 6 18 hpat1 126103 126114 ACATAC 6 2 12 hpat1 127210 127221 TATATA 6 2 12 hpat1 128149 128164 TTTG 4 4 16 hpat1 128765 128776 GTATTT 6 2 12 hpat1 128861 128872 ATTTTC 6 2 12 hpat1 129323 129334 ACATAT 6 2 12 hpat1 130114 130125 GTGTTT 6 2 12 hpat1 131739 131750 TTTGTC 6 2 12 hpat1 131826 131837 TTCTGA 6 2 12 hpat1 132617 132628 AGGAAC 6 2 12 hpat1 134376 134387 AGATTT 6 2 12 hpat1 135238 135249 ACATAG 6 2 12 hpat1 135419 135430 CAACTT 6 2 12 hpat1 136414 136429 CACA 4 4 16 hpat1 136957 136968 AAAAAG 6 2 12 hpat1 137030 137041 AAAAAG 6 2 12 hpat1 137212 137223 GGAGAG 6 2 12 hpat1 137369 137380 AAACTA 6 2 12 hpat1 137535 137546 CAAATC 6 2 12 hpat1 137558 137575 AAA 3 6 18 hpat1 137727 137738 GAAGTC 6 2 12 hpat1 138896 138907 AAAAAA 6 2 12 hpat1 139228 139242 AAA 3 5 15 hpat1 140264 140275 TGTGTG 6 2 12 hpat1 140827 140838 TTTTAT 6 2 12 hpat1 141801 141812 TAATAT 6 2 12 hpat1 141988 141999 TGTGTG 6 2 12 hpat1 142002 142017 TATA 4 4 16 hpat1 143051 143072 TG 2 11 22 hpat1 144388 144399 AAAAAA 6 2 12 hpat1 144871 144888 TTG 3 6 18 hpat1 147608 147619 CTAGAA 6 2 12 hpat1 148148 148159 AAAAAA 6 2 12 hpat1 148417 148428 CTCCCT 6 2 12 hpat1 148859 148870 TAATAA 6 2 12 hpat1 150186 150217 AC 2 16 32 hpat1 152016 152027 AAAAAG 6 2 12 hpat1 152576 152587 TGTGTG 6 2 12 hpat1 155739 155750 AAGGCA 6 2 12 hpat1 156308 156325 TTTTAG 6 3 18 hpat1 157058 157073 TTTA 4 4 16 hpat1 158960 158971 ACCTAA 6 2 12 hpat1 159221 159232 TCCCAA 6 2 12 hpat1 160996 161007 GCTGCC 6 2 12 hpat1 166906 166925 AATAA 5 4 20 hpat1 168215 168240 AC 2 13 26 hpat1 168672 168683 ATTAAC 6 2 12 hpat1 168738 168767 GAAAA 5 6 30 hpat1 170405 170416 AAAAAC 6 2 12 hpat1 171678 171689 AACAAA 6 2 12 hpat1 171976 171987 AAATCA 6 2 12 hpat1 173024 173035 ATGGTG 6 2 12 hpat1 175792 175803 TTCTTT 6 2 12 hpat1 175804 175818 TTT 3 5 15 hpat1 176854 176868 TTT 3 5 15 hpat1 177755 177766 CTGCTT 6 2 12 hpat1 180030 180047 TTTTTG 6 3 18 hpat1 180499 180510 CCCACT 6 2 12 hpat1 180843 180854 ATTTGT 6 2 12 hpat1 180871 180902 GT 2 16 32 hpat1 183233 183244 AAATAA 6 2 12 hpat1 184102 184116 AAT 3 5 15 hpat1 184259 184282 T 1 24 24 hpat1 184344 184355 ACCTCC 6 2 12 hpat1 184870 184885 TCTC 4 4 16 hpat1 185111 185122 CCCAGG 6 2 12 hpat1 186379 186390 AGTGGG 6 2 12 hpat1 186480 186491 ATTCTT 6 2 12 hpat1 187054 187075 A 1 22 22 hpat1 188601 188612 TTCTTT 6 2 12 hpat1 191292 191303 AAAAAA 6 2 12 hpat1 192318 192329 AAAAAA 6 2 12 hpat1 192448 192463 TAAA 4 4 16 hpat1 195173 195184 TGAAAG 6 2 12 hpat1 198108 198131 T 1 24 24 hpat1 200074 200088 TTT 3 5 15 hpat1 202803 202814 ATATGT 6 2 12 hpat1 202815 202826 ATATAT 6 2 12 hpat1 202828 202863 TG 2 18 36 hpat1 202864 202883 TA 2 10 20 hpat1 203432 203447 TTTG 4 4 16 hpat1 203519 203530 ACCTCC 6 2 12 hpat1 206032 206043 ACAAAT 6 2 12 hpat1 206400 206419 AGGG 4 5 20 hpat1 206623 206666 GGAA 4 11 44 hpat1 211255 211266 CAGAAA 6 2 12 hpat1 213725 213736 AGATAA 6 2 12 hpat1 217138 217185 AAAT 4 12 48 hpat1 218421 218432 AAAAAT 6 2 12 hpat1 218898 218913 TAAA 4 4 16 hpat1 219257 219274 TTT 3 6 18 hpat1 222009 222020 AAAAAA 6 2 12 hpat1 222072 222093 T 1 22 22 hpat1 222157 222168 GCCTCC 6 2 12 hpat1 223960 223971 AAAAAA 6 2 12 hpat1 224548 224559 AACAAC 6 2 12 hpat1 225191 225208 AAA 3 6 18 hpat1 225402 225413 AATTAG 6 2 12 hpat1 225596 225613 AAA 3 6 18 hpat1 225617 225628 TGACTC 6 2 12 hpat1 226078 226089 CTGATT 6 2 12 hpat1 228565 228576 ATAAAA 6 2 12 hpat1 228923 228940 AAA 3 6 18 hpat1 230562 230591 TA 2 15 30 hpat1 230592 230619 GA 2 14 28 hpat1 232105 232124 CA 2 10 20 hpat1 232606 232629 AAAAAG 6 4 24 hpat1 232635 232682 AAGG 4 12 48 hpat1 233855 233869 AAA 3 5 15 hpat1 234129 234140 GGAGGT 6 2 12 hpat1 234204 234215 AAAAAA 6 2 12 hpat1 234534 234545 AAAAAA 6 2 12 hpat1 235842 235853 GGAGGT 6 2 12 hpat1 235922 235937 AAAT 4 4 16 hpat1 236235 236246 AAACAC 6 2 12 hpat1 236491 236502 TTCTCT 6 2 12 hpat1 237108 237147 AC 2 20 40 hpat1 237543 237558 AAAT 4 4 16 hpat1 237921 237932 GGAGGT 6 2 12 hpat1 237998 238009 AAAAAA 6 2 12 hpat1 239085 239099 TTT 3 5 15 hpat1 240473 240487 AAA 3 5 15 hpat1 240934 240959 AT 2 13 26 hpat1 241171 241182 ATATAT 6 2 12 hpat1 241668 241687 TTTTG 5 4 20 hpat1 242103 242118 AGAT 4 4 16 hpat1 242122 242161 AGAT 4 10 40 hpat1 243504 243515 GAGAGA 6 2 12 hpat1 246294 246329 TTTG 4 9 36 hpat1 246701 246712 TCCTCA 6 2 12 hpat1 247307 247324 AAA 3 6 18 hpat1 247883 247894 ATGTTC 6 2 12 hpat1 248587 248610 GT 2 12 24 hpat1 248613 248628 GTGT 4 4 16 hpat1 248666 248677 TGGCAG 6 2 12 hpat1 250106 250117 CTCAAT 6 2 12 hpat1 250129 250152 T 1 24 24 hpat1 250499 250510 AAGAAG 6 2 12 hpat1 250826 250837 CTCTAC 6 2 12 hpat1 250951 250970 TAAA 4 5 20 hpat1 252089 252100 CTCTCT 6 2 12 hpat1 252706 252717 ATAAAA 6 2 12 hpat1 252729 252740 AATAAT 6 2 12 hpat1 253241 253252 CATGTG 6 2 12 hpat1 254795 254809 TTT 3 5 15 hpat1 256098 256113 GGAG 4 4 16 hpat1 256152 256171 AGGG 4 5 20 hpat1 256552 256587 AC 2 18 36 hpat1 257215 257226 AAAAAA 6 2 12 hpat1 257470 257489 TTTTG 5 4 20 hpat1 259012 259047 AGGG 4 9 36 hpat1 259068 259079 AAAGAA 6 2 12 hpat1 259101 259116 AGAA 4 4 16 hpat1 262098 262109 GGGGTG 6 2 12 hpat1 262176 262187 TTCTTC 6 2 12 hpat1 262313 262324 AGGGGC 6 2 12 hpat1 264201 264224 GGAG 4 6 24 hpat1 264325 264348 GGAG 4 6 24 hpat1 264477 264496 GGAG 4 5 20 hpat1 264513 264536 GGAG 4 6 24 hpat1 264545 264564 GGAG 4 5 20 hpat1 264643 264658 GGGA 4 4 16 hpat1 264660 264675 GGAG 4 4 16 hpat1 264700 264715 GGAG 4 4 16 hpat1 265005 265016 GCCCCG 6 2 12 hpat1 265567 265584 AAT 3 6 18 hpat1 265803 265817 AAC 3 5 15 hpat1 265866 265877 TAACAA 6 2 12 hpat1 265931 265945 AAC 3 5 15 hpat1 265994 266005 TAACAA 6 2 12 hpat1 266186 266197 CTGGAA 6 2 12 hpat1 266759 266778 TAAA 4 5 20 hpat1 268395 268406 GGAGGT 6 2 12 hpat1 268907 268918 TTTTTT 6 2 12 hpat1 269912 269923 ATGGAC 6 2 12 hpat1 271171 271182 GATTTA 6 2 12 hpat1 271562 271573 TGAAAA 6 2 12 hpat1 272103 272114 AGAGAG 6 2 12 hpat1 272180 272191 AGGAAA 6 2 12 hpat1 272192 272209 AGAAAA 6 3 18 hpat1 273132 273143 TTACTG 6 2 12 hpat1 273507 273536 A 1 30 30 hpat1 273765 273794 TTTCTT 6 5 30 hpat1 273795 273815 T 1 21 21 hpat1 274215 274226 GAGCCT 6 2 12 hpat1 274597 274608 GCCTGA 6 2 12 hpat1 274850 274861 TGTTCT 6 2 12 hpat1 276183 276205 T 1 23 23 hpat1 277679 277690 ACACAC 6 2 12 hpat1 278427 278438 AAAAAA 6 2 12 hpat1 278575 278586 CCTAGT 6 2 12 hpat1 279697 279708 TTTTTG 6 2 12 hpat1 282294 282309 AAAG 4 4 16 hpat1 282512 282523 AAAAAT 6 2 12 hpat1 282752 282763 TTGCTT 6 2 12 hpat1 283102 283116 AAA 3 5 15 hpat1 283586 283597 GGCGGC 6 2 12 hpat1 283666 283677 CGGCGG 6 2 12 hpat1 286603 286614 TGACTC 6 2 12 hpat1 287369 287380 ACCTCC 6 2 12 hpat1 288276 288287 AGAAAC 6 2 12 hpat1 290125 290139 AAA 3 5 15 hpat1 291615 291630 TAAA 4 4 16 hpat1 291852 291863 TTTTTT 6 2 12 hpat1 292027 292038 TTTTTT 6 2 12 hpat1 292194 292209 TTTC 4 4 16 hpat1 292210 292227 TTT 3 6 18 hpat1 292583 292594 TTTTCT 6 2 12 hpat1 292663 292678 TTCC 4 4 16 hpat1 292687 292698 TCTTTC 6 2 12 hpat1 293586 293597 TTGAGG 6 2 12 hpat1 293663 293682 AAAAT 5 4 20 hpat1 294172 294183 TCTGCC 6 2 12 hpat1 296514 296531 TTT 3 6 18 hpat1 297142 297162 ATT 3 7 21 hpat1 298177 298196 CCTC 4 5 20 hpat1 298501 298512 TAATTT 6 2 12 hpat1 298885 298896 CATCCA 6 2 12 hpat1 299051 299062 TTTTTC 6 2 12 hpat1 299063 299077 TTT 3 5 15 hpat1 300065 300076 CCTCAA 6 2 12 hpat1 300704 300721 TTT 3 6 18 hpat1 300989 301004 TTTG 4 4 16 hpat1 301005 301016 TTTTTG 6 2 12 hpat1 301468 301479 CCACAC 6 2 12 hpat1 301529 301558 TAT 3 10 30 hpat1 302529 302540 TTTTTT 6 2 12 hpat1 303598 303609 AAAAAA 6 2 12 hpat1 303764 303775 AAAAAT 6 2 12 hpat1 304750 304761 AAAAAA 6 2 12 hpat1 305047 305058 AAAAAA 6 2 12 hpat1 305434 305467 CA 2 17 34 hpat1 306054 306065 AAAAAA 6 2 12 hpat1 306497 306508 TGTTGG 6 2 12 hpat1 307067 307078 AAAAAA 6 2 12 hpat1 307299 307310 CAGCTC 6 2 12 hpat1 308588 308607 TATT 4 5 20 hpat1 309049 309060 AGCAGC 6 2 12 hpat1 309969 309980 CCACCC 6 2 12 hpat1 311300 311311 GAGGGG 6 2 12 hpat1 311654 311665 CCCCCA 6 2 12 hpat1 312004 312015 GCGGCT 6 2 12 hpat1 312356 312373 GCC 3 6 18 hpat1 312410 312421 GAGGAG 6 2 12 hpat1 314011 314022 CCCTGT 6 2 12 hpat1 314319 314336 TTT 3 6 18 hpat1 314344 314355 AACAAC 6 2 12 hpat1 315088 315099 ATAATA 6 2 12 hpat1 315897 315908 CAGGCC 6 2 12 hpat1 317487 317498 AAAAAA 6 2 12 hpat1 319116 319127 TCTCTC 6 2 12 hpat1 321259 321276 TTTTGT 6 3 18 hpat1 321968 321985 TTC 3 6 18 hpat1 321986 322033 CTT 3 16 48 hpat1 322044 322055 TTCTTC 6 2 12 hpat1 322062 322073 TTCTTC 6 2 12 hpat1 322074 322085 CTCTTC 6 2 12 hpat1 322086 322100 TTC 3 5 15 hpat1 322102 322122 TCT 3 7 21 hpat1 322123 322140 CCT 3 6 18 hpat1 322154 322168 TTC 3 5 15 hpat1 323618 323641 TC 2 12 24 hpat1 323657 323672 AGAG 4 4 16 hpat1 323766 323777 ACCATC 6 2 12 hpat1 323846 323857 TCCCCC 6 2 12 hpat1 324349 324386 TG 2 19 38 hpat1 324773 324784 TTGTTG 6 2 12 hpat1 325310 325321 GGAGGT 6 2 12 hpat1 325761 325772 TTTTTT 6 2 12 hpat1 325922 325936 TTT 3 5 15 hpat1 325962 325977 TTTC 4 4 16 hpat1 325995 326018 TTCT 4 6 24 hpat1 326132 326143 GCCTCA 6 2 12 hpat1 326428 326439 ATAACA 6 2 12 hpat1 326882 326903 CA 2 11 22 hpat1 328252 328263 ATATGA 6 2 12 hpat1 328370 328401 T 1 32 32 hpat1 329377 329396 TC 2 10 20 hpat1 329866 329883 AAA 3 6 18 hpat1 330393 330404 CTTCCC 6 2 12 hpat1 331403 331414 CACACA 6 2 12 hpat1 331418 331445 AC 2 14 28 hpat1 331912 331923 AAAAAT 6 2 12 hpat1 331929 331940 AAAAAG 6 2 12 hpat1 332957 332968 GCCCCA 6 2 12 hpat1 333162 333173 CACCCC 6 2 12 hpat1 334123 334134 TTGTTG 6 2 12 hpat1 334268 334329 GT 2 31 62 hpat1 334655 334666 AAAAAA 6 2 12 hpat1 335468 335479 CTGCAG 6 2 12 hpat1 335608 335619 GGCCCT 6 2 12 hpat1 335804 335815 TTGTAT 6 2 12 hpat1 336042 336053 GAGGCT 6 2 12 hpat1 336279 336299 A 1 21 21 hpat1 336448 336474 A 1 27 27 hpat1 337163 337174 TAAAAA 6 2 12 hpat1 339091 339102 GGTGAG 6 2 12 hpat1 340801 340812 TTTTTT 6 2 12 hpat1 341153 341170 TTTTTA 6 3 18 hpat1 342133 342147 AAA 3 5 15 hpat1 343753 343764 GGAGGT 6 2 12 hpat1 344175 344186 AAAATT 6 2 12 hpat1 344342 344366 TTTTC 5 5 25 hpat1 344367 344384 TTT 3 6 18 hpat1 344599 344610 GGCCTC 6 2 12 hpat1 345784 345803 A 1 20 20 hpat1 347339 347350 ACACAG 6 2 12 hpat1 347894 347905 GGAGGT 6 2 12 hpat1 347972 347986 AAA 3 5 15 hpat1 348658 348673 AATG 4 4 16 hpat1 348739 348766 ATTT 4 7 28 hpat1 348822 348833 ACCTCT 6 2 12 hpat1 349404 349415 CCCCTG 6 2 12 hpat1 350549 350563 AAA 3 5 15 hpat1 351013 351024 CACATG 6 2 12 hpat1 351586 351606 T 1 21 21 hpat1 352174 352193 AAAG 4 5 20 hpat1 353018 353033 AAAC 4 4 16 hpat1 353654 353665 TCTCTC 6 2 12 hpat1 354071 354088 TTT 3 6 18 hpat1 355441 355464 A 1 24 24 hpat1 356742 356753 AGATGG 6 2 12 hpat1 357237 357248 AATTCA 6 2 12 hpat1 357793 357804 CCACCC 6 2 12 hpat1 358582 358593 GTGAGA 6 2 12 hpat1 359129 359148 AAAAG 5 4 20 hpat1 359151 359166 GGAA 4 4 16 hpat1 359807 359826 TTAT 4 5 20 hpat1 360492 360506 AAC 3 5 15 hpat1 360640 360651 AGAGCA 6 2 12 hpat1 360676 360687 AACAAC 6 2 12 hpat1 360993 361004 AAAGAA 6 2 12 hpat1 361816 361831 AAAC 4 4 16 hpat1 362642 362653 CTCTTC 6 2 12 hpat1 362938 362952 TTT 3 5 15 hpat1 363151 363162 GATCTT 6 2 12 hpat1 363465 363479 TTT 3 5 15 hpat1 364493 364507 TTT 3 5 15 hpat1 365380 365391 GGAGGT 6 2 12 hpat1 366470 366484 AAA 3 5 15 hpat1 367830 367841 GGGGTG 6 2 12 hpat1 367885 367914 TG 2 15 30 hpat1 367918 367929 GCGCGC 6 2 12 hpat1 369146 369157 ACACAC 6 2 12 hpat1 369223 369234 TTGTTT 6 2 12 hpat1 370082 370093 ATTAGG 6 2 12 hpat1 370892 370903 TTATTT 6 2 12 hpat1 371203 371217 TTT 3 5 15 hpat1 371649 371663 TTT 3 5 15 hpat1 372440 372451 ACCTCC 6 2 12 hpat1 373342 373356 AAA 3 5 15 hpat1 373851 373862 GTTGGA 6 2 12 hpat1 376041 376052 GGAGGT 6 2 12 hpat1 376789 376815 A 1 27 27 hpat1 377249 377260 CCTGAG 6 2 12 hpat1 377813 377824 AAAAAA 6 2 12 hpat1 378349 378360 TTTTTT 6 2 12 hpat1 379129 379140 TTTTTT 6 2 12 hpat1 379796 379807 TTTTCT 6 2 12 hpat1 379824 379838 TTT 3 5 15 hpat1 379902 379913 ACCTCC 6 2 12 hpat1 380591 380602 AAAAAA 6 2 12 hpat1 380955 380969 TTT 3 5 15 hpat1 384331 384342 AAAAAA 6 2 12 hpat1 384768 384779 TTTTGT 6 2 12 hpat1 384884 384895 CTTCTG 6 2 12 hpat1 386748 386759 CTGCAG 6 2 12 hpat1 387480 387494 AAA 3 5 15 hpat1 387951 387962 TGGGGG 6 2 12 hpat1 388197 388208 GGAGGT 6 2 12 hpat1 388272 388298 A 1 27 27 hpat1 390061 390072 AATATA 6 2 12 hpat1 390511 390522 AAAAAA 6 2 12 hpat1 390939 390974 CA 2 18 36 hpat1 391213 391224 AACAAC 6 2 12 hpat1 391730 391741 TTTTTT 6 2 12 hpat1 392496 392516 A 1 21 21 hpat1 393018 393029 GGCAGG 6 2 12 hpat1 393263 393274 TGGAGC 6 2 12 hpat1 393714 393725 GCTCCT 6 2 12 hpat1 393907 393918 GCCCCG 6 2 12 hpat1 394078 394089 CCGCCG 6 2 12 hpat1 394172 394183 CACTTT 6 2 12 hpat1 395341 395352 TTTTTT 6 2 12 hpat1 395519 395530 TGGGAA 6 2 12 hpat1 396741 396756 TTTA 4 4 16 hpat1 398200 398211 TTTTTT 6 2 12 hpat1 399192 399203 AACAAC 6 2 12 hpat1 399363 399374 TTTCCT 6 2 12 hpat1 399446 399457 ACTGGC 6 2 12 hpat1 399792 399806 AAA 3 5 15 hpat1 399965 399976 AAAAAA 6 2 12 hpat1 401245 401256 AAAAAC 6 2 12 hpat1 402032 402049 TTT 3 6 18 hpat1 403273 403300 TG 2 14 28 hpat1 405046 405057 GACCCT 6 2 12 hpat1 406470 406481 CCACCT 6 2 12 hpat1 406635 406646 CCCCCA 6 2 12 hpat1 406676 406687 CCCCAT 6 2 12 hpat1 406729 406740 CCCCCA 6 2 12 hpat1 406946 406957 AGCAGC 6 2 12 hpat1 408399 408410 TTTTTT 6 2 12 hpat1 409295 409306 CGGAGG 6 2 12 hpat1 409374 409389 ATAT 4 4 16 hpat1 411079 411090 TTTTTT 6 2 12 hpat1 411698 411715 TTT 3 6 18 hpat1 411778 411789 ACCTCC 6 2 12 hpat1 412137 412148 ATTTTT 6 2 12 hpat1 412888 412917 T 1 30 30 hpat1 413750 413761 CCCAGC 6 2 12 hpat1 415300 415314 TTT 3 5 15 hpat1 415761 415772 CAGAGG 6 2 12 hpat1 416538 416549 CCACAT 6 2 12 hpat1 418814 418825 CAGGGG 6 2 12 hpat1 422182 422193 GAAACA 6 2 12 hpat1 423212 423223 AAATAA 6 2 12 hpat1 424001 424012 GTCTAG 6 2 12 hpat1 424336 424347 GCCCAG 6 2 12 hpat1 424668 424679 CAGCTG 6 2 12 hpat1 425324 425335 GTCACA 6 2 12 hpat1 425542 425553 CTACTC 6 2 12 hpat1 427055 427066 TGAGGC 6 2 12 hpat1 428931 428942 GAGGCA 6 2 12 hpat1 429287 429298 ATAAAA 6 2 12 hpat1 430039 430050 ACACAC 6 2 12 hpat1 430204 430218 AAA 3 5 15 hpat1 430892 430903 AAAAAC 6 2 12 hpat1 433017 433040 T 1 24 24 hpat1 433197 433214 TTT 3 6 18 hpat1 433986 433997 CATTGA 6 2 12 hpat1 434454 434465 GTTGTT 6 2 12 hpat1 434763 434777 AAA 3 5 15 hpat1 434915 434932 TTT 3 6 18 hpat1 435226 435243 TTT 3 6 18 hpat1 435358 435377 A 1 20 20 hpat1 436225 436239 TTT 3 5 15 hpat1 436387 436401 TTT 3 5 15 hpat1 436833 436848 AAAT 4 4 16 hpat1 437626 437645 AAAT 4 5 20 hpat1 438925 438936 AAAAAC 6 2 12 hpat1 439225 439262 A 1 38 38 hpat1 439559 439573 AAC 3 5 15 hpat1 439615 439637 T 1 23 23 hpat1 439700 439711 ACCTCC 6 2 12 hpat1 440311 440325 AAA 3 5 15 hpat1 440725 440748 ATT 3 8 24 hpat1 440749 440760 TTATTT 6 2 12 hpat1 442019 442036 AAAATA 6 3 18 hpat1 442318 442329 CAAAAA 6 2 12 hpat1 442719 442730 ACCTCC 6 2 12 hpat1 443008 443022 TTT 3 5 15 hpat1 443088 443099 ACCTCC 6 2 12 hpat1 443320 443335 TTTA 4 4 16 hpat1 444386 444400 TTT 3 5 15 hpat1 445705 445716 TTATTT 6 2 12 hpat1 445717 445732 ATTT 4 4 16 hpat1 446505 446519 AAA 3 5 15 hpat1 446850 446861 AACAAA 6 2 12 hpat1 447436 447447 TTATTA 6 2 12 hpat1 448341 448352 CTGCCC 6 2 12 hpat1 448561 448572 TCGGCA 6 2 12 hpat1 449223 449234 ATTGTG 6 2 12 hpat1 449770 449781 TTTTTT 6 2 12 hpat1 451023 451034 TTTGTT 6 2 12 hpat1 451475 451490 TGTA 4 4 16 hpat1 452085 452108 A 1 24 24 hpat1 452536 452547 ATCAGC 6 2 12 hpat1 452702 452727 TA 2 13 26 hpat1 453077 453091 TTT 3 5 15 hpat1 453851 453862 AAAAAT 6 2 12 hpat1 453964 453975 CAGATA 6 2 12 hpat1 455184 455195 ATTTAA 6 2 12 hpat1 458294 458305 CTGTTG 6 2 12 hpat1 459372 459383 AGTCTC 6 2 12 hpat1 459470 459481 CCTGCC 6 2 12 hpat1 461444 461455 GGAGGT 6 2 12 hpat1 461519 461533 AAA 3 5 15 hpat1 462041 462052 AGACTA 6 2 12 hpat1 462062 462073 CAAAAG 6 2 12 hpat1 463723 463734 ACCCAG 6 2 12 hpat1 463956 463975 AAACA 5 4 20 hpat1 464056 464067 GCATTT 6 2 12 hpat1 464824 464843 A 1 20 20 hpat1 466294 466317 TG 2 12 24 hpat1 466327 466338 GTGTGT 6 2 12 hpat1 467570 467581 TTTTTT 6 2 12 hpat1 468461 468472 ACACAC 6 2 12 hpat1 469650 469661 TGGGAA 6 2 12 hpat1 470754 470779 TG 2 13 26 hpat1 471054 471065 GGAGGC 6 2 12 hpat1 471128 471165 A 1 38 38 hpat1 471166 471221 TA 2 28 56 hpat1 471298 471309 TCTCAC 6 2 12 hpat1 471602 471613 TTGGAG 6 2 12 hpat1 472084 472095 TACACA 6 2 12 hpat1 474126 474140 TTT 3 5 15 hpat1 476040 476051 TTAAAA 6 2 12 hpat1 476070 476081 TCAAAA 6 2 12 hpat1 476120 476131 TTTTTT 6 2 12 hpat1 476421 476435 TTT 3 5 15 hpat1 476497 476511 TTT 3 5 15 hpat1 476790 476804 TTT 3 5 15 hpat1 476979 476996 AAA 3 6 18 hpat1 478010 478033 AAAACA 6 4 24 hpat1 478269 478280 TTTTTT 6 2 12 hpat1 479363 479374 CCACTG 6 2 12 hpat1 480111 480131 T 1 21 21 hpat1 480195 480206 CCTCCG 6 2 12 hpat1 481379 481390 AAACAG 6 2 12 hpat1 484422 484443 T 1 22 22 hpat1 484767 484778 TTTTAC 6 2 12 hpat1 485404 485415 AACAAA 6 2 12 hpat1 485646 485657 CATCGG 6 2 12 hpat1 486045 486062 AAA 3 6 18 hpat1 486722 486743 T 1 22 22 hpat1 487157 487168 TTTTTT 6 2 12 hpat1 489258 489269 TCTCAT 6 2 12 hpat1 490266 490283 AAAACA 6 3 18 hpat1 490694 490705 TCAGCT 6 2 12 hpat1 491439 491462 T 1 24 24 hpat1 491755 491766 TTTTTT 6 2 12 hpat1 491956 491977 T 1 22 22 hpat1 492607 492618 CCTGCC 6 2 12 hpat1 493273 493284 GGAGGC 6 2 12 hpat1 493346 493357 CACACA 6 2 12 hpat1 496259 496273 TTT 3 5 15 hpat1 497786 497813 AC 2 14 28 hpat1 498279 498290 TTCTTC 6 2 12 hpat1 498874 498885 TATTTC 6 2 12 hpat1 498952 498963 CACACA 6 2 12 hpat1 499113 499124 AGGTGT 6 2 12 hpat1 500427 500446 AAAC 4 5 20 hpat1 500448 500459 AAAAAC 6 2 12 hpat1 500768 500779 CAGCCT 6 2 12 hpat1 501705 501716 CACACA 6 2 12 hpat1 501890 501901 AAATGA 6 2 12 hpat1 504615 504626 TATTTT 6 2 12 hpat1 504795 504814 T 1 20 20 hpat1 505013 505033 T 1 21 21 hpat1 505628 505639 AAACAA 6 2 12 hpat1 506288 506299 AAAGAC 6 2 12 hpat1 507516 507527 AGTAAC 6 2 12 hpat1 508773 508788 TTTA 4 4 16 hpat1 509939 509961 A 1 23 23 hpat1 510502 510519 AAA 3 6 18 hpat1 510633 510647 AAC 3 5 15 hpat1 510704 510715 GAGGCT 6 2 12 hpat1 510735 510746 GGAGGT 6 2 12 hpat1 510788 510808 A 1 21 21 hpat1 511425 511436 ATAAAA 6 2 12 hpat1 511729 511743 AAA 3 5 15 hpat1 511755 511766 AATAAT 6 2 12 hpat1 511915 511936 A 1 22 22 hpat1 513045 513060 GAGA 4 4 16 hpat1 513078 513121 AG 2 22 44 hpat1 513354 513365 AAAAAC 6 2 12 hpat1 514714 514725 TTTTGT 6 2 12 hpat1 515269 515283 TTT 3 5 15 hpat1 516547 516561 TTT 3 5 15 hpat1 517637 517648 CATGTA 6 2 12 hpat1 518248 518259 TTTTTT 6 2 12 hpat1 518408 518428 T 1 21 21 hpat1 518943 518954 AAAAAC 6 2 12 hpat1 519163 519174 TGTTTT 6 2 12 hpat1 519687 519702 ATAC 4 4 16 hpat1 520951 520965 AAA 3 5 15 hpat1 521038 521049 GGAGGT 6 2 12 hpat1 521113 521144 A 1 32 32 hpat1 521818 521835 AAA 3 6 18 hpat1 522338 522349 GAAAAT 6 2 12 hpat1 524042 524056 TTT 3 5 15 hpat1 526369 526380 TTCACA 6 2 12 hpat1 527826 527837 TTTTTA 6 2 12 hpat1 528955 528966 CCTGAC 6 2 12 hpat1 529165 529176 AACTCC 6 2 12 hpat1 529760 529771 AGCGGC 6 2 12 hpat1 532566 532585 CT 2 10 20 hpat1 532765 532779 TAT 3 5 15 hpat1 534656 534681 T 1 26 26 hpat1 535074 535085 TTTTAT 6 2 12 hpat1 535729 535744 GAAA 4 4 16 hpat1 535746 535773 AAAG 4 7 28 hpat1 535782 535793 AGAGAG 6 2 12 hpat1 536150 536161 TTTAGT 6 2 12 hpat1 538740 538751 AAATAT 6 2 12 hpat1 538773 538792 AAGG 4 5 20 hpat1 538800 538811 TTTTTT 6 2 12 hpat1 539339 539350 GGAGGT 6 2 12 hpat1 539414 539433 A 1 20 20 hpat1 540074 540085 AAAAAA 6 2 12 hpat1 540498 540509 TGTTTT 6 2 12 hpat1 541889 541900 AACAAC 6 2 12 hpat1 542948 542959 AAAAAA 6 2 12 hpat1 542960 542975 ATAT 4 4 16 hpat1 543137 543148 CAACAA 6 2 12 hpat1 543959 543970 GGAGGT 6 2 12 hpat1 544033 544050 AAAAAC 6 3 18 hpat1 544054 544068 ACC 3 5 15 hpat1 544522 544533 TTGCTG 6 2 12 hpat1 544658 544669 TTTTTT 6 2 12 hpat1 546135 546146 CAAAAA 6 2 12 hpat1 546382 546393 TTTTTC 6 2 12 hpat1 546493 546504 AGCCTC 6 2 12 hpat1 547434 547445 AAATAA 6 2 12 hpat1 549626 549637 GAGAGG 6 2 12 hpat1 550639 550658 TGTT 4 5 20 hpat1 550723 550734 ACCTCC 6 2 12 hpat1 551639 551650 TTTTAT 6 2 12 hpat1 552257 552280 AAAAAT 6 4 24 hpat1 552764 552781 TTA 3 6 18 hpat1 552848 552859 ACCTCC 6 2 12 hpat1 556060 556071 GGTTTT 6 2 12 hpat1 556296 556310 TTT 3 5 15 hpat1 556975 557006 AAAT 4 8 32 hpat1 557124 557138 TTT 3 5 15 hpat1 558010 558021 TGGCTC 6 2 12 hpat1 558471 558482 GATCTG 6 2 12 hpat1 562681 562692 CTGTAA 6 2 12 hpat1 562697 562708 TTTTCT 6 2 12 hpat1 563925 563936 GAGGCT 6 2 12 hpat1 564030 564044 AAA 3 5 15 hpat1 564727 564758 AC 2 16 32 hpat1 565343 565354 CATGTG 6 2 12 hpat1 565426 565437 TTCTAG 6 2 12 hpat1 566572 566583 AGGAGA 6 2 12 hpat1 566984 566995 AAAACA 6 2 12 hpat1 568068 568091 T 1 24 24 hpat1 569331 569342 GGAGGT 6 2 12 hpat1 569405 569416 AAAAAT 6 2 12 hpat1 570032 570043 TTTTTT 6 2 12 hpat1 570541 570558 AAT 3 6 18 hpat1 571280 571291 TGTATA 6 2 12 hpat1 571318 571333 TGTG 4 4 16 hpat1 571613 571633 T 1 21 21 hpat1 572152 572163 TTATTA 6 2 12 hpat1 573516 573530 TTG 3 5 15 hpat1 573851 573862 TTTTTT 6 2 12 hpat1 575452 575471 AATTA 5 4 20 hpat1 575472 575483 AATTTT 6 2 12 hpat1 575669 575680 ATTTTT 6 2 12 hpat1 575802 575813 ATTTTT 6 2 12 hpat1 575871 575894 AC 2 12 24 hpat1 577212 577226 TTT 3 5 15 hpat1 577377 577388 TTTGTA 6 2 12 hpat1 578002 578013 CCTTTC 6 2 12 hpat1 578512 578523 TTTTTT 6 2 12 hpat1 578671 578702 TA 2 16 32 hpat1 578703 578717 TTT 3 5 15 hpat1 578849 578866 TTT 3 6 18 hpat1 579478 579489 AGAGAG 6 2 12 hpat1 579493 579504 GGGTCT 6 2 12 hpat1 580201 580220 A 1 20 20 hpat1 580329 580340 TTTTTA 6 2 12 hpat1 580420 580431 ACCTCC 6 2 12 hpat1 580977 580988 AAAAAA 6 2 12 hpat1 581225 581242 TTA 3 6 18 hpat1 581452 581463 CAGGGG 6 2 12 hpat1 581509 581520 GGGTGG 6 2 12 hpat1 582118 582141 AAAACA 6 4 24 hpat1 583541 583556 TGTA 4 4 16 hpat1 584746 584763 TTT 3 6 18 hpat1 585485 585496 GAGGCT 6 2 12 hpat1 587188 587199 GGAGGT 6 2 12 hpat1 587261 587275 AAA 3 5 15 hpat1 588890 588901 CAGCCC 6 2 12 hpat1 589708 589719 CCCCAC 6 2 12 hpat1 589883 589894 CACACT 6 2 12 hpat1 591642 591653 CCAGGT 6 2 12 hpat1 591776 591787 GGGCTT 6 2 12 hpat1 591897 591908 CAGGGA 6 2 12 hpat1 592321 592332 GGAGGC 6 2 12 hpat1 592395 592412 AAA 3 6 18 hpat1 593794 593805 TCATCT 6 2 12 hpat1 595349 595360 CGGCGG 6 2 12 hpat1 595567 595578 TCCCGC 6 2 12 hpat1 595602 595613 CACCAC 6 2 12 hpat1 595622 595636 CGC 3 5 15 hpat1 595738 595749 TCCTCG 6 2 12 hpat1 597756 597767 TGAGAC 6 2 12 hpat1 599394 599405 GTGTGC 6 2 12 hpat1 600006 600025 TC 2 10 20 hpat1 600026 600037 TATATA 6 2 12 hpat1 600041 600052 ATATAT 6 2 12 hpat1 600118 600129 TATATA 6 2 12 hpat1 601868 601882 TTT 3 5 15 hpat1 603188 603199 GAAGTG 6 2 12 hpat1 608484 608499 TGAA 4 4 16 hpat1 608985 608996 GCTGTG 6 2 12 hpat1 609780 609795 AAAC 4 4 16 hpat1 610192 610203 TATCTC 6 2 12 hpat1 612381 612392 TCACCA 6 2 12 hpat1 613446 613457 CCATCC 6 2 12 hpat1 613964 613975 TTCTTG 6 2 12 hpat1 615611 615622 AGAAGG 6 2 12 hpat1 615632 615643 AAGAAG 6 2 12 hpat1 616140 616161 A 1 22 22 hpat1 617678 617697 TTTTG 5 4 20 hpat1 620321 620332 GCCAGC 6 2 12 hpat1 620338 620349 GGGGTG 6 2 12 hpat1 621050 621061 AGGGCC 6 2 12 hpat1 621851 621862 TCTCTC 6 2 12 hpat1 622005 622016 GATTTT 6 2 12 hpat1 622557 622571 ACC 3 5 15 hpat1 622586 622606 CAC 3 7 21 hpat1 623139 623150 ACACAA 6 2 12 hpat1 623378 623389 TGGACA 6 2 12 hpat1 623706 623723 AAATAA 6 3 18 hpat1 624013 624030 AAA 3 6 18 hpat1 624648 624662 TTT 3 5 15 hpat1 624724 624735 ACCTCC 6 2 12 hpat1 624982 624993 TTTTTT 6 2 12 hpat1 625129 625146 TTTTAT 6 3 18 hpat1 625595 625606 AGCCAG 6 2 12 hpat1 627030 627041 GAGGCT 6 2 12 hpat1 627187 627198 AATAAC 6 2 12 hpat1 629078 629092 TGA 3 5 15 hpat1 631394 631405 AACAAC 6 2 12 hpat1 631429 631443 AAA 3 5 15 hpat1 632704 632731 A 1 28 28 hpat1 632732 632743 GTGGGG 6 2 12 hpat1 633722 633733 ACTCTC 6 2 12 hpat1 634319 634330 CTTCCT 6 2 12 hpat1 634612 634623 TCCTTG 6 2 12 hpat1 635904 635918 AAA 3 5 15 hpat1 637886 637900 AAA 3 5 15 hpat1 639391 639402 CGCCGC 6 2 12 hpat1 639742 639759 GCGGGG 6 3 18 hpat1 640687 640698 CCTTTC 6 2 12 hpat1 642772 642783 AAAAAA 6 2 12 hpat1 646664 646681 AAA 3 6 18 hpat1 649141 649152 AGCTGG 6 2 12 hpat1 649225 649236 GTGTGT 6 2 12 hpat1 649865 649876 GCGAGG 6 2 12 hpat1 650432 650443 CCGCCC 6 2 12 hpat1 650444 650455 CGCCGC 6 2 12 hpat1 651677 651688 CCCCTC 6 2 12 hpat1 651819 651830 TGCCTC 6 2 12 hpat1 652399 652410 GATAGT 6 2 12 hpat1 652602 652613 CTCCTT 6 2 12 hpat1 653054 653065 GGAAGG 6 2 12 hpat1 655086 655103 TACTGC 6 3 18 hpat1 655717 655728 AGCCTC 6 2 12 hpat1 656009 656020 CCTCCC 6 2 12 hpat1 657238 657249 AGGCCA 6 2 12 hpat1 657509 657520 TTGGAC 6 2 12 hpat1 657610 657621 TGGACC 6 2 12 hpat1 658606 658633 GT 2 14 28 hpat1 658934 658949 CCCT 4 4 16 hpat1 660059 660070 GTGTCA 6 2 12 hpat1 660332 660343 GCTGTA 6 2 12 hpat1 660404 660415 CTCTCT 6 2 12 hpat1 660566 660577 TCTCTC 6 2 12 hpat1 660592 660621 TC 2 15 30 hpat1 660622 660647 AC 2 13 26 hpat1 660896 660927 GT 2 16 32 hpat1 660985 660996 TGGGGA 6 2 12 hpat1 661631 661642 CCCCCG 6 2 12 hpat1 661936 661947 GGCTCG 6 2 12 hpat1 661953 661964 GGCGGC 6 2 12 hpat1 662189 662200 CAGAGA 6 2 12 hpat1 662391 662402 ACACAC 6 2 12 hpat1 662617 662628 CCTCTC 6 2 12 hpat1 663604 663618 AAA 3 5 15 hpat1 663771 663791 AAT 3 7 21 hpat1 664081 664092 TTTTTT 6 2 12 hpat1 667668 667679 AATGGG 6 2 12 hpat1 668025 668036 GTGTAA 6 2 12 hpat1 668718 668729 CCATTT 6 2 12 hpat1 669900 669914 AAA 3 5 15 hpat1 670208 670219 TTTTTA 6 2 12 hpat1 671191 671202 GAGGGG 6 2 12 hpat1 671869 671886 TACAAA 6 3 18 hpat1 671887 671925 TAA 3 13 39 hpat1 671964 671975 CTGAGG 6 2 12 hpat1 672093 672104 AACAAC 6 2 12 hpat1 672105 672116 AAAGAA 6 2 12 hpat1 672622 672639 AAA 3 6 18 hpat1 675613 675624 AAGTGT 6 2 12 hpat1 675731 675742 GGCACA 6 2 12 hpat1 676339 676350 ATTTCT 6 2 12 hpat1 676352 676363 TTTATT 6 2 12 hpat1 677003 677036 GT 2 17 34 hpat1 677457 677468 AGAAAG 6 2 12 hpat1 678388 678399 TGAAAC 6 2 12 hpat1 678858 678869 TTTTTC 6 2 12 hpat1 682346 682361 TTAT 4 4 16 hpat1 684578 684589 AATAAC 6 2 12 hpat1 684953 684964 AGAGCC 6 2 12 hpat1 685312 685323 GGAGGT 6 2 12 hpat1 685386 685413 A 1 28 28 hpat1 686068 686079 CGGGGG 6 2 12 hpat1 686825 686842 TTT 3 6 18 hpat1 686899 686910 CAGCCT 6 2 12 hpat1 687586 687605 TCAA 4 5 20 hpat1 687651 687662 AGGGAG 6 2 12 hpat1 688067 688078 TCCTGG 6 2 12 hpat1 689018 689037 AAAT 4 5 20 hpat1 690132 690143 TTTCTT 6 2 12 hpat1 690303 690314 AAGAGG 6 2 12 hpat1 693707 693718 AGGGGC 6 2 12 hpat1 694426 694437 TTTTGT 6 2 12 hpat1 694506 694517 CAGCCT 6 2 12 hpat1 694598 694609 TTTTTT 6 2 12 hpat1 694903 694914 TATTTA 6 2 12 hpat1 695265 695276 CAAGGC 6 2 12 hpat1 696496 696507 CGCCCC 6 2 12 hpat1 696718 696729 CGCCCC 6 2 12 hpat1 697067 697078 TGGGGG 6 2 12 hpat1 697568 697589 GT 2 11 22 hpat1 698582 698593 TCTGAT 6 2 12 hpat1 698951 698962 AATTGA 6 2 12 hpat1 699157 699171 TTT 3 5 15