view test-data/all_fasta.loc @ 7:f27be15cc58d draft

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#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
#<unique_build_id>      <dbkey> <display_name>  <file_path>
#
#So, all_fasta.loc could look something like this:
#
#apiMel3        apiMel3 Honeybee (Apis mellifera): apiMel3      /path/to/genome/apiMel3/apiMel3.fa
#hg19canon      hg19    Human (Homo sapiens): hg19 Canonical    /path/to/genome/hg19/hg19canon.fa
#hg19full       hg19    Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
#
#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#
hgtest	hgtest	hgtest	${__HERE__}/humsamp.fa