# HG changeset patch
# User fubar
# Date 1720923407 0
# Node ID 67235512ab62e857d90db75a70d125d09b73d130
# Parent  12753df8dbb34ed94c95f95acc8e30e7203c78e6
planemo upload for repository https://github.com/fubar2/microsatbed commit 7ceb6658309a7ababe622b5d92e729e5470e22f0-dirty

diff -r 12753df8dbb3 -r 67235512ab62 all_fasta.loc.sample
--- a/all_fasta.loc.sample	Sat Jul 13 23:16:59 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-#This file lists the locations and dbkeys of all the fasta files
-#under the "genome" directory (a directory that contains a directory
-#for each build). The script extract_fasta.py will generate the file
-#all_fasta.loc. This file has the format (white space characters are
-#TAB characters):
-#
-#<unique_build_id>	<dbkey>		<display_name>	<file_path>
-#
-#So, all_fasta.loc could look something like this:
-#
-#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3		/path/to/genome/apiMel3/apiMel3.fa
-#hg19canon	hg19		Human (Homo sapiens): hg19 Canonical		/path/to/genome/hg19/hg19canon.fa
-#hg19full	hg19		Human (Homo sapiens): hg19 Full			/path/to/genome/hg19/hg19full.fa
-#
-#Your all_fasta.loc file should contain an entry for each individual
-#fasta file. So there will be multiple fasta files for each build,
-#such as with hg19 above.
-#
diff -r 12753df8dbb3 -r 67235512ab62 test-data/all_fasta.loc
--- a/test-data/all_fasta.loc	Sat Jul 13 23:16:59 2024 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-#This file lists the locations and dbkeys of all the fasta files
-#under the "genome" directory (a directory that contains a directory
-#for each build). The script extract_fasta.py will generate the file
-#all_fasta.loc. This file has the format (white space characters are
-#TAB characters):
-#
-#<unique_build_id>	<dbkey>		<display_name>	<file_path>
-#
-#So, all_fasta.loc could look something like this:
-#
-#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3		/path/to/genome/apiMel3/apiMel3.fa
-#hg19canon	hg19		Human (Homo sapiens): hg19 Canonical		/path/to/genome/hg19/hg19canon.fa
-#hg19full	hg19		Human (Homo sapiens): hg19 Full			/path/to/genome/hg19/hg19full.fa
-#
-#Your all_fasta.loc file should contain an entry for each individual
-#fasta file. So there will be multiple fasta files for each build,
-#such as with hg19 above.
-#
diff -r 12753df8dbb3 -r 67235512ab62 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Sat Jul 13 23:16:59 2024 +0000
+++ b/tool_data_table_conf.xml.sample	Sun Jul 14 02:16:47 2024 +0000
@@ -2,6 +2,6 @@
     <!-- Locations of all fasta files under genome directory -->
     <table name="all_fasta" comment_char="#">
         <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/all_fasta.loc" />
+        <file path="tool-data/all_fasta.loc.sample" />
     </table>
 </tables>
diff -r 12753df8dbb3 -r 67235512ab62 tool_data_table_conf.xml.test
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml.test	Sun Jul 14 02:16:47 2024 +0000
@@ -0,0 +1,7 @@
+<tables>
+    <!-- Locations of dbkeys and len files under genome directory -->
+    <table name="__dbkeys__" comment_char="#" allow_duplicate_entries="False">
+        <columns>value, name, len_path</columns>
+        <file path="${__HERE__}/tool-data/all_fasta.loc.sample" />
+    </table>
+</tables>