view pyrevpos/pyrevpos.xml @ 0:bf92b6bd8b20 draft

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<tool name="pyrevpos" id="pyrevpos" version="0.01">
  <!--Cite: Creating re-usable tools from scripts doi:             10.1093/bioinformatics/bts573-->
  <!--Source in git at: https://github.com/fubar2/toolfactory-->
  <!--Created by [e-mail] at 22/08/2020 22:44:22 using the Galaxy Tool Factory.-->
  <description>pyrevpos</description>
  <requirements>
    <requirement version="" type="package">python</requirement>
  </requirements>
  <configfiles>
    <configfile name="runMe"><![CDATA[

# reverse order of text by row
import sys
inp = sys.argv[1]
outp = sys.argv[2]
i = open(inp,'r').readlines()
o = open(outp,'w')
for row in i:
  rs = row.rstrip()
  rs = list(rs)
  rs.reverse()
  o.write(''.join(rs))
  o.write('\n')
o.close()
]]></configfile>
  </configfiles>
  <stdio>
    <exit_code range="1:" level="fatal"/>
  </stdio>
  <version_command/>
  <command interpreter="python"><![CDATA[$runMe $input1
$output]]></command>
  <inputs>
    <param help="parameter_help" label="inputfile" optional="false" multiple="false" format="txt" type="data" name="input1" argument="input1"/>
  </inputs>
  <outputs>
    <data hidden="false" format="txt" name="output"/>
  </outputs>
  <tests>
    <test>
      <output value="output_sample" name="output" format="txt"/>
      <param value="input1_sample" name="input1"/>
    </test>
  </tests>
  <help><![CDATA[
**What it Does**
 ]]></help>
</tool>