annotate home/ross/galaxy/tools/tool_makers/toolfactory/test-data/output2_sample @ 47:e95d9fe5ab50 draft

adding tests and local installation
author fubar
date Sun, 23 Aug 2020 21:02:03 -0400
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47
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1 *trats uoy erofeb GNINRAW*
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2
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3 YLNO yxalaG etavirp a no loot siht llatsnI
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4 ecnatsni noitcudorp ro cilbup a no REVEN esaelP
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5
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6 troppus noitatic gnidda notlihC nhoJ yb 4102 tsugua detadpU
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7
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8 keeB ned nav suiraM yb detroper sgub xif ot 4102 8 tsugua detadpU
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9
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10 ta ecruoser eht etic esaelP
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11 fer=epytyek&JWYdwMrWs1hQzcl=yekji?375stb/tnirper/igc/gro.slanruojdrofxo.scitamrofnioib//:ptth
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12 .krow dehsilbup ruoy ni loot siht esu uoy fi
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13
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14 **yrotS trohS**
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15
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16 .sloot yxalaG wen gnitareneg fo elbapac loot yxalaG lausunu na si sihT
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17 gnitpircs suoregnad ylemertxe erofereht dna *detcirtsernu* gnisopxe yb skrow tI
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18 ot meht gniwolla ,revres yxalaG tsoh eht fo srotartsinimda detangised lla ot
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19 ,stes atad tupni detceles elpitlum revo lrep dna hs ,nohtyp ,R ni stpircs nur
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20 .tuptuo sa tes atad wen elgnis a gnitirw
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21
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22 *sretemarap elyts esrapgra ro lanoitisop htiw elbatucexe yna ro tpircs hsab/lrep/nohtyp/r gnikrow a evah uoY*
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23
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24 .loot yxalaG a gnisu ,setunim ni loot yxalaG yranidro na otni denrut eb nac tI
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25
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26
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27 **yxalaG yna otni noitallatsni rof sloot yxalaG wen fo noitareneg detamotuA**
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28
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29 .ylppus uoy sgnittes retemarap dna stupni atad tset elpmas llams gnisu detareneg si tset A
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30 a dliub ot desu eb nac yeht ,decudorp neeb evah stuptuo esac tset eht ecnO
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31 tnemeriuqer a sa dekab si elbatucexe ro tpircs deilppus ehT .loot yxalaG wen
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32 .xob eht fo tuo elbitapmoc wolfkrow ylluf ,loot yxalaG yranidro ,wen a otni
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33 rotartsinimda na yb dehs loot a aiv dellatsni era sloot detareneG
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34 .sresu ruoy rof sloot yxalaG rehto lla ekil yltcaxe krow dna
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35
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36 **liateD eroM**
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37
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38 a otni etsap ot tpircs a deraperp evah dluohs uoy ,yrotcaFlooT eht esu oT
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39 yrotsih ruoy morf tceles ot ydaer elpmaxe tupni tset llams a dna dnim ni egakcap a evah ro ,xob txet
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40 .tpircs wen ruoy tset ot
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41
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42 em rof skrow ```atad-tset/yrotcafloot/srekam_loot/sloot/yxalag/~ atad_tset-- yxalag/~ toor_yxalag-- lmx.2yrotcaFlooTgr tset omenalp```
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43
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44 uoY .mrof yrotcaF looT eht no egaugnal gnitpircs hcae ni elpmaxe na si erehT
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45 thgir eht tceles ot rebmemer - tuo ti yrt ot eseht etsap dna tuc tsuj nac
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46 gnisu tes atad tset llams a etaerc ot deen osla ll'uoY .esaelp reterpretni
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47 .loot atad wen dda yrotsih yxalaG eht
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48
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49 ni tuptuo loot eht no nottub "oder" eht esu ,wohemos sliaf tpircs eht fI
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50 gub eht xiF .tpircs nekorb htiw etelpmoc mrof eht etaercer ot yrotsih ruoy
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51 .taeper ,hsaw ,esniR .niaga etucexe dna
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52
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53 tpircs ruoy snur taht loot yxalaG wen a ,yllufssecus snur tpircs eht ecnO
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54 dna txet pleh emos ylppus dna noitpo "etareneg" eht tceleS .detareneg eb nac
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55 epytatad yxalaG wen a fo mrof eht ni detareneg eb lliw loot wen ehT .seman
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56 a ot daolpu ot ydaer evihcra na s'ti ,stseggus eman eht sa - *zg.dehsloot*
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57 .yrotisoper loot wen a sa dehSlooT yxalaG
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58
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59 revres yxalaG lacol yna otni dellatsni eb nac ti ,dehSlooT a ni s'ti ecnO
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60 .ecafretni evitartsinimda revres eht morf
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61
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62 tpircs eht ,emit hcae - ti nur nac sresu lacol ,dellatsni si loot wen eht ecnO
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63 nesohc tupni eht htiw detucexe eb lliw tliub saw ti nehw deilppus saw taht
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64 eht htiw etareneg uoy sloot eht ,sdrow rehto nI .yrotsih s'resu eht morf
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65 .emit yreve tpircs ruoy nur tub,loot yxalaG rehto yna ekil tsuj nur yrotcaFlooT
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66
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67 ,tuptuo eno ,tupni enO .stnenopmoc wolfkrow rof tcefrep era sloot yrotcaf looT
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68 .selbairav on
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69
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70 ,loot siht fo *rewop emosewa eht tiolpxe ylefas dna ylluf oT*
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71 siht gnillatsni repoleved a eb dluohs uoy ,dehSlooT eht dna yxalaG
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72 na era uoy erehw ecnatsni lacol hctarcs/lanosrep/etavirp a no loot
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73 ees seceip eht lla peek ot teg uoy ,ti kaerb uoy fi ,nehT .resu_nimda
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74 emoH/ikiw/yrotcaflootyxalag/rabuf/gro.tekcubtib//:sptth
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75
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76 **noitallatsnI**
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77 eht gnisu yltneinevnoc tsom ti llatsni nac uoY .loot yxalaG a si sihT
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78 niaM yxalaG eht dniF .knil "sdehs loot esworb dna hcraeS" evitartsinimda
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79 yrotcafloot eht rof hcraes dna /ude.usp.xb.2g.dehsloot//:sptth ta dehsloot
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80 .ti llatsni ot noitpo eht tceles dna edoc eht weiver dna ti nepO .yrotisoper
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81
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82 eb ot deen ereh selif yp dna lmx eht ,yaw taht loot eht teg t'nac uoy fI
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83 sloot wen a otni deipoc
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84 yrtne wen a sdeen lmx.fnoc_loot ruoY yrotcafloot/sloot sa hcus yrotceridbus
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85 lmx eht ot gnitniop
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86 ::ekil gnihtemos - elif
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87
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88 >"sredliubloot"=di "sloot gnidliub looT"=eman noitces<
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89 >/"lmx.yrotcaFlooTgr/yrotcafloot"=elif loot<
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90 >noitces/<
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91
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92 ,ereht ydaerla ton fI
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93 :dda esaelp
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94 "yraniB:yranib.sepytatad.yxalag"=epyt "zg.dehsloot"=noisnetxe epytatad<
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95 >/ "eurT"=ssalcbus "pizg-x/trapitlum"=epytemim
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96 .lmx.fnoc_sepyt_atad lacol ruoy ot
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97
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98
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99 **noitucexe detcirtseR**
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100
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101 - sresu nimda yb YLNO elbasu eb neht lliw flesti loot yrotcaf loot ehT
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102 YLNO .thgir s'taht ,seY** ini.igsw_esrevinu ni sresu_nimda ni sDI htiw elpoep
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103 ot dewolla fI .tnemom a rof ti tuoba knihT **loot siht nur nac sresu_nimda
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104 dluow taht gniht ylno eht ,revres yxalaG ruoy no tpircs yrartibra yna nur
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105 ylbaborp dluow atad yxalaG ruoy lla gniyortsed no tneb tnaercsim a edepmi
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106 .slliks lacinhcet etairporppa fo kcal eb
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107
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108 **seod ti tahW**
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109
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110 dna R ,nohtyp ni stpircs elpmis rof yrotcaf loot a si sihT
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111 .taht si looc woH .detareneg yllacitamotua era stset lanoitcnuF .yltnerruc lrep
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112
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113 nac yllanoitpO .yrotsih eht morf tupni eno daer taht stpircs elpmis ot DETIMIL
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114 stuptuo fo rebmun yna tcelloc yllanoitpo dna ,tesatad yrotsih wen eno etirw
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115 - etagivan ot resu eht rof egap xedni LMTH detarenegotua na no sknil otni
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116 nwohs era stuptuo fdp - selif tuptuo dna segami setirw tpircs eht fi lufesu
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117 dna taht os tpircstsohg htiw knurhs era s'fdp detaolb s'R dna slianbmuht sa
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118 .elbaliava eb ot deen kigamegami
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119
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120 trats os ,loot yxalaG yna ekil decnahne dna detide eb nac sloot detareneG
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121 a ot pu gel suoires a uoy steg tpircs detareneg a ecnis pu dliub dna llams
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122 .eno xelpmoc erom
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123
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124 **od uoy tahW**
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125
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126 dna srorre xatnys eht xif uoy ,tpircs ruoy nur dna etsap uoY
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127 erofeb tpircs eht tide dna nottub oder eht esu nac uoY .snur ti yllautneve
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128 .llew ytterp skrow ti - gubed uoy sa ti nurer ot gniyrt
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129
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130 elbitapmoc dehsloot a etareneg nac uoy ,atad tset emos no skrow tpircs eht ecnO
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131 ni loot yxalaG yranidro na sa nur ot ydaer tpircs ruoy gniniatnoc elif pizg
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132 detamotua ylegral dna efas snaem tahT .dehsloot lacol ruoy no yrotisoper a
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133 .dehsloot ruoy esu ot derugifnoc yxalaG noitcudorp yna ni noitallatsni
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134
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135 **ytiruceS loot detareneG**
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136
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137 tsuj s'ti ,loot detareneg a llatsni uoy ecnO
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138 rieht dna yllamron nur tsuj yehT .efas si tpircs eht gnimussa - loot rehtona
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139 .dehsloot efas ecitcarp ,esaelp tub erucesni yllausunu gnihtyna od tonnac resu
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140 .yracs yllaer si ti - eno siht yllaicepsE .loot yna llatsni uoy erofeb edoc eht daeR
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141
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142 **edoC dneS**
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143
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144 ?esaelp seussi tekcubtib sa emoclew snoitseggus dna sehctaP
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145
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146 **noitubirttA**
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147
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148 yrotcaF looT yxalaG ehT :stpircs morf sloot elbasu-er gnitaerC
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149 maeT yxalaG ehT ;nnameiZ kraM ;ipsaK ynotnA ;surazaL ssoR
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150 375stb/scitamrofnioib/3901.01 :iod ;2102 scitamrofnioiB
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151
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152 fer=epytyek&JWYdwMrWs1hQzcl=yekji?375stb/tnirper/igc/gro.slanruojdrofxo.scitamrofnioib//:ptth
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153
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154 **gnisneciL**
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155
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156 0102 surazaL ssoR thgirypoC
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157 moc doirep liam g ta surazal ssor
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158
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159 .devreser sthgir llA
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160
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161 LPGL eht rednu desneciL
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162
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163 **tohsneercs yrotagilbO**
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164
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165 gnp.looTtpircScimanyd/segami/989ef2308adf/crs/rekamlootyxalag/rabuf/gro.tekcubtib//:ptth