annotate toolfactory/docker/TF_example_wf.ga @ 41:f8c1694190f0 draft

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author fubar
date Sun, 16 Aug 2020 08:11:10 -0400
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2 "a_galaxy_workflow": "true",
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5 "name": "TF examples",
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8 "annotation": "a fasta file - gc ratio will be estimated",
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15 "description": "a fasta file - gc ratio will be estimated",
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19 "label": "phiX.fasta",
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20 "name": "Input dataset",
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21 "outputs": [],
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384 "tool_state": "{\"__input_ext\": \"input\", \"chromInfo\": \"/home/ross/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"interexe\": {\"interpreter\": \"python\", \"__current_case__\": 2, \"interpreter_version\": \"\", \"exe_package_version\": \"\", \"dynScript\": \"# reverse order of text by row\\nimport sys\\ninp = sys.argv[1]\\noutp = sys.argv[2]\\ni = open(inp,'r').readlines()\\no = open(outp,'w')\\nfor row in i:\\n rs = row.rstrip()\\n rs = list(rs)\\n rs.reverse()\\n o.write(''.join(rs))\\n o.write('\\\\n')\\no.close()\"}, \"makeMode\": {\"make_Tool\": \"yes\", \"__current_case__\": 0, \"tool_version\": \"0.01\", \"tool_desc\": \"pyrevpos\", \"help_text\": \"**What it Does**\", \"citations\": []}, \"ppass\": {\"parampass\": \"positional\", \"__current_case__\": 1, \"history_inputs\": [{\"__index__\": 0, \"input_files\": {\"__class__\": \"ConnectedValue\"}, \"input_formats\": [\"txt\"], \"input_label\": \"inputfile\", \"input_help\": \"parameter_help\", \"input_CL\": \"1\"}], \"history_outputs\": [{\"__index__\": 0, \"history_name\": \"output\", \"history_format\": \"txt\", \"history_CL\": \"2\"}], \"edit_params\": \"yes\", \"additional_parameters\": []}, \"tool_name\": \"pyrevpos\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
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385 "tool_version": "2.00",
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386 "type": "tool",
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387 "uuid": "08a48555-8700-4652-a76b-df1f54197049",
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388 "workflow_outputs": [
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389 {
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393 },
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394 {
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396 "output_name": "new_tool",
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398 }
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399 ]
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400 },
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410 }
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411 },
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414 "name": "toolfactory",
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415 "outputs": [
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416 {
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417 "name": "TF_run_report",
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418 "type": "input"
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419 },
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420 {
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421 "name": "new_tool",
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423 }
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424 ],
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434 },
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438 "tool_version": "2.00",
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442 {
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