comparison toolfactory/rgToolFactory2.py @ 148:470d3e309508 draft

Uploaded

147:4e83512cb72c

        penv = os.environ
        # ourdir = os.getcwd()
        # print('########## ourdir=',ourdir,'gr=',self.args.galaxy_root)
        # pconfig = os.path.join(ourdir,'planemo', '.planemo.yml')
        # penv["PLANEMO_GLOBAL_CONFIG_PATH"] = pconfig
        # penv["HOME"] = ourdir
        # # self.set_planemo_galaxy_root(self.args.galaxy_root, config_path=pconfig)
        xreal = "%s.xml" % self.tool_name
        tool_test_path = os.path.join(
            self.repdir, f"{self.tool_name}_planemo_test_report.html"
        )
        if os.path.exists(self.tlog):

            stdout=tout,
        )
        tout.close()
        return p.returncode

    def set_planemo_galaxy_root(self, galaxyroot, config_path=".planemo.yml"):
        # planemo tries to write to ~/.planemo - trying to convince it otherwise
        CONFIG_TEMPLATE = """## Planemo Global Configuration File.
## Everything in this file is completely optional - these values can all be
## configured via command line options for the corresponding commands.
## Specify a default galaxy_root for test and server commands here.

148:470d3e309508

        penv = os.environ
        # ourdir = os.getcwd()
        # print('########## ourdir=',ourdir,'gr=',self.args.galaxy_root)
        # pconfig = os.path.join(ourdir,'planemo', '.planemo.yml')
        # penv["PLANEMO_GLOBAL_CONFIG_PATH"] = pconfig
        # os.mkdir(os.path.join(ourdir,'planemo'))
        # penv["HOME"] = os.path.join(ourdir,'home')
        # os.mkdir(os.path.join(ourdir,'home'))
        # self.set_planemo_galaxy_root(self.args.galaxy_root, config_path=pconfig)
        xreal = "%s.xml" % self.tool_name
        tool_test_path = os.path.join(
            self.repdir, f"{self.tool_name}_planemo_test_report.html"
        )
        if os.path.exists(self.tlog):

            stdout=tout,
        )
        tout.close()
        return p.returncode

    def set_planemo_galaxy_root(self, galaxyroot, config_path):
        # planemo tries to write to ~/.planemo - trying to convince it otherwise
        CONFIG_TEMPLATE = """## Planemo Global Configuration File.
## Everything in this file is completely optional - these values can all be
## configured via command line options for the corresponding commands.
## Specify a default galaxy_root for test and server commands here.