comparison toolfactory/rgToolFactory2.py @ 51:4b71b252eacb draft

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50:bf432f4486c7

                "--galaxy_root",
                self.args.galaxy_root,
                "--update_test_data",
                "--galaxy_python_version",
                "3.6",
                "--no_conda_auto_install",
                "--no_conda_auto_init",
                xreal,
            ]
        else:
            cll = ["planemo", "test", "--galaxy_python_version",
                "3.6", "--galaxy_root",
                self.args.galaxy_root,
                "--no_conda_auto_install",
                "--no_conda_auto_init",
                xreal,]
        p = subprocess.run(
                cll, shell=True, cwd=self.tooloutdir, stderr=tout, stdout=tout
            )
        if genoutputs:

            "fubar",
            "--toolshed",
            self.args.toolshed_url,
            "--section_label",
            "Generated Tools",
            "--install_tool_dependencies",
        ]
        print("running\n", " ".join(cll))
        p = subprocess.run(cll, shell=False, stderr=tout, stdout=tout)
        if p.returncode != 0:
            print(

51:4b71b252eacb

                "--galaxy_root",
                self.args.galaxy_root,
                "--update_test_data",
                "--galaxy_python_version",
                "3.6",
                xreal,
            ]
        else:
            cll = ["planemo", "test", "--galaxy_python_version",
                "3.6", "--galaxy_root",
                self.args.galaxy_root,
                xreal,]
        p = subprocess.run(
                cll, shell=True, cwd=self.tooloutdir, stderr=tout, stdout=tout
            )
        if genoutputs:

            "fubar",
            "--toolshed",
            self.args.toolshed_url,
            "--section_label",
            "Generated Tools",

        ]
        print("running\n", " ".join(cll))
        p = subprocess.run(cll, shell=False, stderr=tout, stdout=tout)
        if p.returncode != 0:
            print(