Mercurial > repos > fubar > tool_factory_2

comparison toolfactory/rgToolFactory2.py @ 84:5304cda01f60 draft

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author fubar
date Thu, 19 Nov 2020 02:26:42 +0000
parents 48acd0708839
children dbbb9298a20f
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83:48acd0708839 84:5304cda01f60
1 # rgToolFactory.py 1 # replace with shebang for biocontainer
2 # see https://github.com/fubar2/toolfactory 2 # see https://github.com/fubar2/toolfactory
3 # 3 #
4 # copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012 4 # copyright ross lazarus (ross stop lazarus at gmail stop com) May 2012
5 # 5 #
6 # all rights reserved 6 # all rights reserved
896 else: 896 else:
897 tout = open(self.tlog, "w") 897 tout = open(self.tlog, "w")
898 if genoutputs: 898 if genoutputs:
899 dummy, tfile = tempfile.mkstemp() 899 dummy, tfile = tempfile.mkstemp()
900 cll = [ 900 cll = [
901 ".","/home/biodocker/galaxy-central/.venv/bin/activate &&", 901 ".","/home/biodocker/galaxy-central/.venv/bin/activate", "&&",
902 "planemo", 902 "planemo",
903 "test", 903 "test",
904 "--test_data", os.path.abspath(self.testdir), 904 "--test_data", os.path.abspath(self.testdir),
905 "--test_output", os.path.abspath(tool_test_path), 905 "--test_output", os.path.abspath(tool_test_path),
906 "--skip_venv", 906 "--skip_venv",