comparison toolfactory/rgToolFactory2.xml @ 129:c35ff02652bf draft

Uploaded

128:56aa8105000d

#set dev_env = os.environ.get('GALAXY_DEVELOPMENT_ENVIRONMENT', '0') == '1'
#if not $dev_env and ( $__user_email__ not in $__admin_users__ ):
python3 $__tool_directory__/rgToolFactory2.py --bad_user $__user_email__
 #else:
python3 $__tool_directory__/rgToolFactory2.py
    #if len(str($cl_prefix)) > 3:
--cl_prefix "$cl_prefix"
    #end if
    #if $cover.commover == "yes":
       #if len(str($cover.command_override)) > 10:
--command_override "$commandoverride"
       #end if

        <when value="0">
             <expand macro="io"/>
        </when>
    </conditional>
    </section>
    <param name="cl_prefix" type="text" value="" label="Suffix for generated command line. Useful for bash post processing. Use override below to replace completely"
            help="';' separated bash commands can be used here for post processing - added at end of autogenerated command line" />
    <conditional name="cover">
        <param name="commover" type="select" display="radio" label="Add Human wrought code to override the generated XML command and/or test section - DIY"
        help = "For arbitrary and artfull command lines. All i/o and parameters must be passed. Choose No unless needed. Not for the faint of heart">
            <option value="no" selected="true">No. Use automatically generated command/test XML </option>
            <option value="yes">Yes. XML needed to override autogenerated command and/or test segments will be pasted below</option>

129:c35ff02652bf

#set dev_env = os.environ.get('GALAXY_DEVELOPMENT_ENVIRONMENT', '0') == '1'
#if not $dev_env and ( $__user_email__ not in $__admin_users__ ):
python3 $__tool_directory__/rgToolFactory2.py --bad_user $__user_email__
 #else:
python3 $__tool_directory__/rgToolFactory2.py
    #if len(str($cl_suffix)) > 0:
--cl_suffix "$cl_suffix"
    #end if
    #if $cover.commover == "yes":
       #if len(str($cover.command_override)) > 10:
--command_override "$commandoverride"
       #end if

        <when value="0">
             <expand macro="io"/>
        </when>
    </conditional>
    </section>
    <param name="cl_suffix" type="text" value="" label="Suffix for generated command line. Useful for bash post processing. Use override below to replace completely"
            help="';' separated bash commands can be used here for post processing - added at end of autogenerated command line">
            <sanitizer>
                 <valid initial="string.printable" />
                 <mapping initial="none"/>
            </sanitizer>
    </param>
    <conditional name="cover">
        <param name="commover" type="select" display="radio" label="Add Human wrought code to override the generated XML command and/or test section - DIY"
        help = "For arbitrary and artfull command lines. All i/o and parameters must be passed. Choose No unless needed. Not for the faint of heart">
            <option value="no" selected="true">No. Use automatically generated command/test XML </option>
            <option value="yes">Yes. XML needed to override autogenerated command and/or test segments will be pasted below</option>