Mercurial > repos > fubar > tool_factory_2
comparison toolfactory/rgToolFactory2.py @ 87:dbbb9298a20f draft
Uploaded
| author | fubar |
|---|---|
| date | Thu, 19 Nov 2020 06:58:17 +0000 |
| parents | 5304cda01f60 |
| children | 7176af503cdd |
comparison
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| 86:5d74a718b92d | 87:dbbb9298a20f |
|---|---|
| 903 "test", | 903 "test", |
| 904 "--test_data", os.path.abspath(self.testdir), | 904 "--test_data", os.path.abspath(self.testdir), |
| 905 "--test_output", os.path.abspath(tool_test_path), | 905 "--test_output", os.path.abspath(tool_test_path), |
| 906 "--skip_venv", | 906 "--skip_venv", |
| 907 "--galaxy_root", | 907 "--galaxy_root", |
| 908 self.args.galaxy_root, | 908 "/home/biodocker/galaxy-central", |
| 909 "--update_test_data", | 909 "--update_test_data", |
| 910 os.path.abspath(xreal), | 910 os.path.abspath(xreal), |
| 911 ] | 911 ] |
| 912 p = subprocess.run( | 912 p = subprocess.run( |
| 913 cll, | 913 cll, |
| 924 "test", | 924 "test", |
| 925 "--test_data", os.path.abspath(self.testdir), | 925 "--test_data", os.path.abspath(self.testdir), |
| 926 "--test_output", os.path.abspath(tool_test_path), | 926 "--test_output", os.path.abspath(tool_test_path), |
| 927 "--skip_venv", | 927 "--skip_venv", |
| 928 "--galaxy_root", | 928 "--galaxy_root", |
| 929 self.args.galaxy_root, | 929 "/home/biodocker/galaxy-central", |
| 930 os.path.abspath(xreal), | 930 os.path.abspath(xreal), |
| 931 ] | 931 ] |
| 932 p = subprocess.run( | 932 p = subprocess.run( |
| 933 cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout | 933 cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout |
| 934 ) | 934 ) |
| 963 if genoutputs: | 963 if genoutputs: |
| 964 dummy, tfile = tempfile.mkstemp() | 964 dummy, tfile = tempfile.mkstemp() |
| 965 cll = [ | 965 cll = [ |
| 966 "planemo", | 966 "planemo", |
| 967 "test", | 967 "test", |
| 968 "--conda_dependency_resolution", | |
| 969 "--test_data", os.path.abspath(self.testdir), | 968 "--test_data", os.path.abspath(self.testdir), |
| 970 "--test_output", os.path.abspath(tool_test_path), | 969 "--test_output", os.path.abspath(tool_test_path), |
| 971 "--skip_venv", | 970 "--skip_venv", |
| 972 "--galaxy_root", | 971 "--galaxy_root", |
| 973 self.args.galaxy_root, | 972 self.args.galaxy_root, |
| 984 | 983 |
| 985 else: | 984 else: |
| 986 cll = [ | 985 cll = [ |
| 987 "planemo", | 986 "planemo", |
| 988 "test", | 987 "test", |
| 989 "--conda_dependency_resolution", | |
| 990 "--test_data", os.path.abspath(self.testdir), | 988 "--test_data", os.path.abspath(self.testdir), |
| 991 "--test_output", os.path.abspath(tool_test_path), | 989 "--test_output", os.path.abspath(tool_test_path), |
| 992 "--skip_venv", | 990 "--skip_venv", |
| 993 "--galaxy_root", | 991 "--galaxy_root", |
| 994 self.args.galaxy_root, | 992 self.args.galaxy_root, |