comparison toolfactory/rgToolFactory2.py @ 118:e43c43396a70 draft

Uploaded

117:b1a29d3d50d6

        if self.args.help_text:
            helptext = open(self.args.help_text, "r").readlines()
            safertext = "\n".join([cheetah_escape(x) for x in helptext])
            if self.args.script_path:
                scr = [x for x in self.spacedScript if x.strip() > ""]
                scr.insert(0,'\n------\n\nScript::\n')
                if len(scr) > 300:
                    scr = (
                        scr[:100]
                        + [">300 lines - stuff deleted", "......"]
                        + scr[-100:]
                    )
                scr.append('\n')
                safertext = safertext + "\n".join(scr)
            self.newtool.help = safertext

                shutil.copyfile(src, dest)


def main():
    """
    This is a Galaxy wrapper. It expects to be called by a special purpose tool.xml as:
    <command interpreter="python">rgBaseScriptWrapper.py --script_path "$scriptPath"
    --tool_name "foo" --interpreter "Rscript"
    </command>
    """
    parser = argparse.ArgumentParser()
    a = parser.add_argument
    a("--script_path", default=None)
    a("--history_test", default=None)

118:e43c43396a70

        if self.args.help_text:
            helptext = open(self.args.help_text, "r").readlines()
            safertext = "\n".join([cheetah_escape(x) for x in helptext])
            if self.args.script_path:
                scr = [x for x in self.spacedScript if x.strip() > ""]
                scr.insert(0,'\n------\n\n\nScript::\n')
                if len(scr) > 300:
                    scr = (
                        scr[:100]
                        + ["    >300 lines - stuff deleted", "    ......"]
                        + scr[-100:]
                    )
                scr.append('\n')
                safertext = safertext + "\n".join(scr)
            self.newtool.help = safertext

                shutil.copyfile(src, dest)


def main():
    """
    This is a Galaxy wrapper. It expects to be called by a special purpose tool.xml

    """
    parser = argparse.ArgumentParser()
    a = parser.add_argument
    a("--script_path", default=None)
    a("--history_test", default=None)