Mercurial > repos > fubar > tool_factory_2
diff getlocalrpackages.py @ 9:ce5ec1d989fd draft
Uploaded
author | fubar |
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date | Wed, 14 Jan 2015 19:17:11 -0500 |
parents | |
children | dd6cf2ddaac7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/getlocalrpackages.py Wed Jan 14 19:17:11 2015 -0500 @@ -0,0 +1,31 @@ +import os +import subprocess + +def find_packages(prefix="package_r_"): + """ + """ + #locate env.sh | grep -i package_r_ + #/data/extended/galaxyJune14_2014/tool_dependency/readline/6.2/devteam/package_r_2_15_0/8ab0d08a3da1/env.sh + #/data/home/rlazarus/galaxy/tool_dependency_dir/R_3_1_1/3.1.1/fubar/package_r_3_1_1/5f1b8d22140a/env.sh + #/data/home/rlazarus/galaxy/tool_dependency_dir/R_3_1_1/3.1.1/fubar/package_r_3_1_1/d9964efbfbe3/env.sh + #/data/home/rlazarus/galtest/tool_dependency_dir/R_3_1_1/3.1.1/fubar/package_r_3_1_1/63cdb9b2234c/env.sh + eprefix = prefix + if prefix.find('/') <> -1: + eprefix = prefix.replace('/','\/') # for grep + cl = ['locate env.sh | grep -i %s' % eprefix,] + p = subprocess.Popen(cl, stdout=subprocess.PIPE, stderr=subprocess.PIPE,shell=True) + out, err = p.communicate() + fpaths = out.split('\n') + fpaths = [x for x in fpaths if len(x) > 1] + fver = [x.split(os.path.sep)[-4:-1] for x in fpaths] + # >>> foo.split(os.path.sep)[-4:-1] + # ['fubar', 'package_r_3_1_1', '63cdb9b2234c'] + res = [['%s rev %s owner %s' % (x[1],x[2],x[0]),fpaths[i],False] for i,x in enumerate(fver)] + res.insert(0,['Use default (system) interpreter','system',False]) + if len(res) > 1: + res[1][2] = True # selected if more than one + # return a triplet - user_sees,value,selected - all unselected if False + return res + +if __name__ == "__main__": + print find_packages()