Mercurial > repos > fubar > tool_factory_2
diff toolfactory/docker/tfwelcome.html @ 46:f8700bed1e17 draft
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| author | fubar |
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| date | Tue, 18 Aug 2020 08:25:43 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/toolfactory/docker/tfwelcome.html Tue Aug 18 08:25:43 2020 -0400 @@ -0,0 +1,61 @@ +<!DOCTYPE html> +<html lang="en"> +<head> + <meta charset="utf-8"> + <link rel="stylesheet" href="/static/style/base.css" type="text/css" /> +</head> +<body style="margin: 0"> + + <div class="jumbotron"> + <div class="container"> + <table><tr><td> + <h2>Hello, your <strong>Galaxy ToolFactory Docker</strong> container is running!</h2> + <strong>If you have not already done so, </strong> + From a handy linux console, please use <br> + <code>docker ps</code><br> + to find this container's name then use<br> + <code>docker exec [container name] config/post-start-actions.sh</code> + <br> + to load the sample tool generators to fully populate this container. + until the Dockerfile for this container figures out how to load a workflow during the build correctly.<br> + To run the workflow you need two small datasets until I get them loaded<br> + phiX.fasta from the Galaxy test-sample directory, and any smallish text file you want such as a readme or script.<br> + When you run the workflow, feed the fasta where it says, and the text file where you see rgToolFactory.py<br> + Send it to the same history and let it run.<br> + With any luck, you will have a history of examples to play with - use the rerun button to repopulate the ToolFactory form to illustrate<br> + positional and argparse style parameter passing for python, a simple bash script using STDIN/STDOUT and the perl (ugh) example from planemo<br> + <a target="_blank" href="https://wiki.galaxyproject.org/Admin/Config" class="btn btn-primary btn-lg">Configuring Galaxy »</a> + <a target="_blank" href="https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial" class="btn btn-primary btn-lg">Installing Tools »</a> + <a target="_parent" href="/tours/core.galaxy_ui" class="btn btn-primary btn-lg">Guided Tour »</a> + </td><td> + <div align=center> + <img src="./welcome_image.png" width="90%" height="90%" /> + </div> + + </td></tr></table> + </div> + </div> + + <div class="container"> + + <p class="lead"> + <a target="_blank" class="reference" href="http://galaxyproject.org/"> + Galaxy</a> is an open platform for supporting data intensive + research. Galaxy is developed by <a target="_blank" class="reference" href="http://wiki.galaxyproject.org/GalaxyTeam">The Galaxy Team</a> + with the support of <a target="_blank" class="reference" href="https://github.com/galaxyproject/galaxy/blob/dev/CONTRIBUTORS.md">many contributors</a>. + The Galaxy Docker project is supported by the University of Freiburg, part of de.NBI. + </p> + + <footer> + The <a target="_blank" class="reference" href="http://galaxyproject.org/">Galaxy Project</a> + is supported in part by <a target="_blank" class="reference" href="http://www.genome.gov">NHGRI</a>, + <a target="_blank" class="reference" href="http://www.nsf.gov">NSF</a>, + <a target="_blank" class="reference" href="http://www.huck.psu.edu">The Huck Institutes of the Life Sciences</a>, + <a target="_blank" class="reference" href="http://www.ics.psu.edu">The Institute for CyberScience at Penn State</a>, + and <a target="_blank" class="reference" href="http://www.jhu.edu/">Johns Hopkins University</a>. + </footer> + + </div> + +</body> +</html>