# HG changeset patch # User fubar # Date 1603328206 0 # Node ID d21517a36db8e2d73e0094b5b2ded8cde24988fd # Parent 68fbdbe35f08e66c1931744e82ffe4bfe81930be Uploaded diff -r 68fbdbe35f08 -r d21517a36db8 toolfactory/rgToolFactory2.py --- a/toolfactory/rgToolFactory2.py Tue Oct 20 03:20:32 2020 +0000 +++ b/toolfactory/rgToolFactory2.py Thu Oct 22 00:56:46 2020 +0000 @@ -629,7 +629,6 @@ else: # work around special case - stdin and write to stdout sti = open(self.infiles[0][IPATHPOS], "rb") sto = open(self.outfiles[0][ONAMEPOS], "wb") - # must use shell to redirect p = subprocess.run(self.cl, shell=False, stdout=sto, stdin=sti) retval = p.returncode sto.close() @@ -696,6 +695,7 @@ cll = [ "planemo", "test", + "--skip_venv", "--galaxy_root", self.args.galaxy_root, "--update_test_data", @@ -703,7 +703,7 @@ ] else: cll = ["planemo", "test", "--galaxy_root", - self.args.galaxy_root, + self.args.galaxy_root, "--skip_venv", xreal,] p = subprocess.run( cll, shell=False, cwd=self.tooloutdir, stderr=tout, stdout=tout diff -r 68fbdbe35f08 -r d21517a36db8 toolfactory/rgToolFactory2.xml --- a/toolfactory/rgToolFactory2.xml Tue Oct 20 03:20:32 2020 +0000 +++ b/toolfactory/rgToolFactory2.xml Thu Oct 22 00:56:46 2020 +0000 @@ -1,5 +1,5 @@ - Scripts into tools v2 + Scripts into tools v2.01 planemo - bioblend - galaxyxml - ephemeris + galaxyxml + ephemeris