changeset 17:a584ff2f7554 draft

Uploaded

--- a/getlocalrpackages.py	Wed Jan 28 19:28:53 2015 -0500
+++ b/getlocalrpackages.py	Sun Feb 01 19:46:48 2015 -0500
@@ -1,5 +1,16 @@
 import os
 import subprocess
+import sys
+
+new_path = [ os.path.join( os.getcwd(), "lib" ) ]
+#new_path.extend( sys.path[1:] ) # remove scripts/ from the path
+sys.path = new_path
+from galaxy import config
+
+aconfig = config.Configuration( )
+M_A_K = aconfig.master_api_key
+print M_A_K
+
 
 def find_packages(prefix="package_r_"):
     """
@@ -12,7 +23,10 @@
     eprefix = prefix
     if prefix.find('/') <> -1:
         eprefix = prefix.replace('/','\/') # for grep
-    cl = ['locate env.sh | grep -i %s' % eprefix,]
+    path = '.'
+    # fails on nitesh's recent mac - locate not working 
+    # cl = ['locate env.sh | grep -i %s' % eprefix,]
+    cl = ['find %s -iname "env.sh" | grep -i %s' % (path,eprefix),]
     p = subprocess.Popen(cl, stdout=subprocess.PIPE, stderr=subprocess.PIPE,shell=True)
     out, err = p.communicate()
     fpaths = out.split('\n')

--- a/rgToolFactory2.xml	Wed Jan 28 19:28:53 2015 -0500
+++ b/rgToolFactory2.xml	Sun Feb 01 19:46:48 2015 -0500
@@ -264,7 +264,7 @@
     <param name="runme" value="tf2_test_runme.py"/>
     <output name='output1' file='tf2_test_out.xls' compare='diff' lines_diff = '10'/>
     <output name='html_file' file="tf2_test.html" compare='diff' lines_diff = '10'/>
-    <output name='new_tool' file="tf2_test.toolshed.gz" compare="sim_size" delta="20" />
+    <output name='new_tool' file="tf2_test.toolshed.gz" compare="sim_size" delta="600" />
 </test>
 </tests>
 <help>