Mercurial > repos > fubar > tool_factory_2

changeset 142:b36f12eb99dc draft

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Uploaded
author fubar
date Sat, 17 Apr 2021 12:29:31 +0000
parents b7b0c4527460
children 4de39d209c5b
files toolfactory/rgToolFactory2.py
diffstat 1 files changed, 0 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/toolfactory/rgToolFactory2.py	Sat Apr 17 11:07:36 2021 +0000
+++ b/toolfactory/rgToolFactory2.py	Sat Apr 17 12:29:31 2021 +0000
@@ -1043,10 +1043,6 @@
         and for generating test outputs if command or test overrides are
         supplied test outputs are sent to repdir for display
         """
-        penv = os.environ
-        pconfig = os.path.join(self.args.tool_dir, '.planemo.yml')
-        penv["PLANEMO_GLOBAL_CONFIG_PATH"] = pconfig
-        self.set_planemo_galaxy_root(self.args.galaxy_root, config_path=pconfig)
         xreal = "%s.xml" % self.tool_name
         tool_test_path = os.path.join(
             self.repdir, f"{self.tool_name}_planemo_test_report.html"
@@ -1073,7 +1069,6 @@
         p = subprocess.run(
             cll,
             shell=False,
-            env=penv,
             cwd=self.tooloutdir,
             stderr=tout,
             stdout=tout,