Mercurial > repos > fubar > tool_factory_2
changeset 133:b843d75a5107 draft
Uploaded
| author | fubar |
|---|---|
| date | Sat, 10 Apr 2021 01:44:50 +0000 |
| parents | 65b5e9acf98a |
| children | 1f353bee783f |
| files | toolfactory/rgToolFactory2.py |
| diffstat | 1 files changed, 8 insertions(+), 12 deletions(-) [+] |
line wrap: on
line diff
--- a/toolfactory/rgToolFactory2.py Sat Apr 10 01:04:14 2021 +0000 +++ b/toolfactory/rgToolFactory2.py Sat Apr 10 01:44:50 2021 +0000 @@ -28,17 +28,13 @@ import tempfile import time - +import galaxyxml.tool as gxt +import galaxyxml.tool.parameters as gxtp +import lxml +import yaml from bioblend import ConnectionError from bioblend import toolshed -import galaxyxml.tool as gxt -import galaxyxml.tool.parameters as gxtp - -import lxml - -import yaml - myversion = "V2.2 February 2021" verbose = True debug = True @@ -305,9 +301,9 @@ print(f'### warning. Repeats for {nam} ignored - not permitted in positional parameter command lines!') over = p["override"] clsuffix.append([p["CL"], nam, over]) - xclsuffix.append([p["CL"], '"$%s"' % nam, over]) + xclsuffix.append([p["CL"], '"$%s"' % nam, over]) for p in self.selpar: - clsuffix.append([p["CL"], nam, p["override"]]) + clsuffix.append([p["CL"], p["name"], p["override"]]) xclsuffix.append([p["CL"], '"$%s"' % nam, p["override"]]) clsuffix.sort() xclsuffix.sort() @@ -490,7 +486,7 @@ newname = p["infilename"] newfmt = p["format"] ndash = self.getNdash(newname) - reps = p.get("repeat",0) == 1 + reps = p.get("repeat", 0) == 1 if not len(p["label"]) > 0: alab = p["CL"] else: @@ -513,7 +509,7 @@ aninput.positional = int(p["origCL"]) aninput.command_line_override = "$%s" % newname if reps: - repe = gxtp.Repeat(name=f"R_{newname}", title=f"Add as many {newlabel} as needed") + repe = gxtp.Repeat(name=f"R_{newname}", title=f"Add as many {alab} as needed") repe.append(aninput) self.tinputs.append(repe) tparm = gxtp.TestRepeat(name=f"R_{newname}")