Mercurial > repos > fubar > tool_factory_2
changeset 65:ed1ecd161295 draft
Uploaded
| author | fubar |
|---|---|
| date | Tue, 10 Nov 2020 23:53:32 +0000 |
| parents | 30847b2e105d |
| children | bc1977b1f7b5 |
| files | toolfactory/rgToolFactory2.py toolfactory/test-data/pyrevpos.python toolfactory/test-data/toolfactory_pyrevpos_tgz_sample |
| diffstat | 3 files changed, 15 insertions(+), 1 deletions(-) [+] |
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--- a/toolfactory/rgToolFactory2.py Tue Nov 10 03:24:28 2020 +0000 +++ b/toolfactory/rgToolFactory2.py Tue Nov 10 23:53:32 2020 +0000 @@ -843,7 +843,6 @@ p = subprocess.run( cll, shell=False, cwd=self.tooloutdir, stderr=dummy, stdout=dummy, ) - dummy.close() # throw all the log away as it will be rerun after outputs are generated else: cll = ["planemo", "test", "--galaxy_root", self.args.galaxy_root, @@ -927,6 +926,8 @@ dest = os.path.join(self.repdir, ofn) src = os.path.join(self.tooloutdir, entry.name) shutil.copyfile(src, dest) + if entry.name.startswith('tool_test_output'): + os.unlink(src) def main():
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/toolfactory/test-data/pyrevpos.python Tue Nov 10 23:53:32 2020 +0000 @@ -0,0 +1,13 @@ +# reverse order of text by row +import sys +inp = sys.argv[1] +outp = sys.argv[2] +i = open(inp,'r').readlines() +o = open(outp,'w') +for row in i: + rs = row.rstrip() + rs = list(rs) + rs.reverse() + o.write(''.join(rs)) +o.close() +