0
|
1 # using the galaxy venv this seems to work
|
|
2 . /galaxy_venv/bin/activate
|
|
3 python scripts/tool_shed/build_ts_whoosh_index.py -c config/tool_shed.yml --config-section tool_shed
|
|
4 # eeesh. /etc/galaxy is where the actual galaxy.yml lives - despite other configs being where they might be expected
|
|
5 # fix tool_shed.yml to 0.0.0.0 and admin email
|
|
6 # add tgz to datatypes :(
|
|
7 # need to source a venv in /export/tool_deps/toolfactorydeps/0.01/fubar/toolfactorydeps/9e9428fe9134/env.sh
|
|
8 # as nothing was done by the setup_virtualenv step apparently.
|
|
9 # gcc and friends for planemo pip installation
|
|
10 # File "/galaxy-central/lib/galaxy/tool_util/verify/interactor.py", line 595, in <listcomp>
|
|
11 # test_user = [user for user in all_users if user["email"] == email][0]
|
|
12 # add local to tool_sheds_conf.xml
|
|
13 # <tool_sheds>
|
|
14 # <tool_shed name="local" url="http://localhost:9009"/>
|
|
15 # mercurial > 5.5!!
|
|
16
|