Mercurial > repos > fubar > tool_factory_docker
view toolfactory_docker/TFdocker_make_demo_jan24.ga @ 6:482386d6cc43 draft default tip
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| author | fubar |
|---|---|
| date | Sun, 24 Jan 2021 03:54:01 +0000 |
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{ "a_galaxy_workflow": "true", "annotation": "", "format-version": "0.1", "name": "ToolFactory - make, test and install demonstration tools", "steps": { "0": { "annotation": "", "content_id": null, "errors": null, "id": 0, "input_connections": {}, "inputs": [ { "description": "", "name": "rgToolFactory2.py" } ], "label": "rgToolFactory2.py", "name": "Input dataset", "outputs": [], "position": { "bottom": 237.32916259765625, "height": 65.76666259765625, "left": 496.8333435058594, "right": 656.8333435058594, "top": 171.5625, "width": 160, "x": 496.8333435058594, "y": 171.5625 }, "tool_id": null, "tool_state": "{\"optional\": false}", "tool_version": null, "type": "data_input", "uuid": "104dbbf5-eaf4-43f3-b1ae-8077dbe92d00", "workflow_outputs": [ { "label": null, "output_name": "output", "uuid": "397c4ecd-021f-42c4-9974-b095b1ac2ec1" } ] }, "1": { "annotation": "", "content_id": null, "errors": null, "id": 1, "input_connections": {}, "inputs": [ { "description": "", "name": 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foo.tar.gz\\ntar -xvf foo.tar.gz\\nTOOLNAME=`find . -name \\\"*.xml\\\"`\\necho \\\"TOOLNAME = $TOOLNAME\\\"\\nplanemo test --test_output $2 $TOOLNAME\"}}, \"io_param\": {\"ppass\": {\"parampass\": \"positional\", \"__current_case__\": 1, \"io\": {\"history_inputs\": [{\"__index__\": 0, \"input_files\": null, \"input_formats\": [\"tgz\"], \"input_label\": \"ToolFactory toolshed archive from the history to test\", \"input_help\": \"\", \"input_CL\": \"1\", \"input_repeat\": \"false\"}], \"history_outputs\": [{\"__index__\": 0, \"history_name\": \"planemo_test_output\", \"history_format\": \"txt\", \"history_CL\": \"2\", \"history_test\": \"sim_size:0.05\"}], \"collection_outputs\": []}, \"addparam\": {\"edit_params\": \"yes\", \"additional_parameters\": []}}}, \"make\": {\"makeMode\": {\"make_Tool\": \"gentest\", \"__current_case__\": 1, \"galaxy_apikey\": \"\", \"toolshed_apikey\": \"\", \"galaxy_url\": \"\", \"toolshed_url\": \"\", \"tool_version\": \"0.01\", \"tool_desc\": \"Tests a ToolFactory tool\", \"help_text\": \"**What it Does**\\n\\nRuns planemo test on a ToolFactory or other toolshed archive\", \"citations\": []}}, \"tool_name\": \"planemo_test\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "2.00", "type": "tool", "uuid": "ac1dfbcf-8f39-45a8-b3d4-93691bd8d974", "workflow_outputs": [ { "label": null, "output_name": "TF_run_report", "uuid": "43750d1d-218f-499b-85d8-56e8ffdc78bd" }, { "label": null, "output_name": "new_tool", "uuid": "a24992fe-44b5-4984-8c95-3d534666fc68" } ] }, "5": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/fubar/tool_factory_docker/rgtfd/2.00", "errors": null, "id": 5, "input_connections": {}, "inputs": [], "label": null, "name": "toolfactory", "outputs": [ { "name": "TF_run_report", "type": "input" }, { "name": "new_tool", "type": "tgz" } ], "position": { "bottom": 845.3291625976562, "height": 73.76666259765625, "left": 496.8333435058594, "right": 656.8333435058594, "top": 771.5625, 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{\"packages\": \"\", \"usescript\": {\"choosescript\": \"yes\", \"__current_case__\": 1, \"scriptrunner\": \"bash\", \"dynScript\": \"echo \\\"You chose $1\\\"\"}}, \"io_param\": {\"ppass\": {\"parampass\": \"positional\", \"__current_case__\": 1, \"io\": {\"history_inputs\": [], \"history_outputs\": [{\"__index__\": 0, \"history_name\": \"select_out\", \"history_format\": \"txt\", \"history_CL\": \"STDOUT\", \"history_test\": \"diff:0\"}], \"collection_outputs\": []}, \"addparam\": {\"edit_params\": \"yes\", \"additional_parameters\": [{\"__index__\": 0, \"param_name\": \"choose\", \"ap_type\": {\"param_type\": \"selecttext\", \"__current_case__\": 4, \"selectTexts\": [{\"__index__\": 0, \"select_text\": \"one\", \"select_value\": \"won\"}, {\"__index__\": 1, \"select_text\": \"two\", \"select_value\": \"too\"}, {\"__index__\": 2, \"select_text\": \"three\", \"select_value\": \"free\"}]}, \"param_label\": \"Choose\", \"param_help\": \"\", \"param_CL\": \"1\", \"param_CLprefixed\": 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