comparison rgToolFactory.py @ 14:43ab59672f78 draft

Uploaded

13:d5a5f9c2c108

verbose = False 
debug = False
toolFactoryURL = 'https://bitbucket.org/fubar/galaxytoolfactory'

# if we do html we need these dependencies
toolhtmldep = """<?xml version="1.0"?>
<tool_dependency>
    <package name="ghostscript" version="9.10">
        <repository name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" />
    </package>
    <package name="graphicsmagick" version="1.3.18">

        if self.opts.make_HTML:
            if self.opts.help_text:
                hlp = open(self.opts.help_text,'r').read()
            else:
                hlp = 'Please ask the tool author for help as none was supplied at tool generation\n'
            tooldeps = toolhtmldep % hlp
            depf = open(os.path.join(tdir,'tool_dependencies.xml'),'w')
            depf.write(hlp)
            depf.write('\n')
            depf.close()
        if self.opts.input_tab <> 'None': # no reproducible test otherwise? TODO: maybe..
            testdir = os.path.join(tdir,'test-data')
            os.mkdir(testdir) # make tests directory

14:43ab59672f78

verbose = False 
debug = False
toolFactoryURL = 'https://bitbucket.org/fubar/galaxytoolfactory'

# if we do html we need these dependencies
toolhtmldepskel = """<?xml version="1.0"?>
<tool_dependency>
    <package name="ghostscript" version="9.10">
        <repository name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu/" />
    </package>
    <package name="graphicsmagick" version="1.3.18">

        if self.opts.make_HTML:
            if self.opts.help_text:
                hlp = open(self.opts.help_text,'r').read()
            else:
                hlp = 'Please ask the tool author for help as none was supplied at tool generation\n'
            tooldepcontent = toolhtmldepskel  % hlp
            depf = open(os.path.join(tdir,'tool_dependencies.xml'),'w')
            depf.write(tooldepcontent)
            depf.write('\n')
            depf.close()
        if self.opts.input_tab <> 'None': # no reproducible test otherwise? TODO: maybe..
            testdir = os.path.join(tdir,'test-data')
            os.mkdir(testdir) # make tests directory