Mercurial > repos > fubar > toolfactory
view toolfactory/test-data/generated_xml_sample @ 50:807b8d103f18 draft default tip
Uploaded
author | fubar |
---|---|
date | Wed, 09 Jun 2021 02:28:01 +0000 |
parents | |
children |
line wrap: on
line source
<tool name="pyrevpos" id="pyrevpos" version="0.01"> <!--Source in git at: https://github.com/fubar2/toolfactory--> <!--Created by test@bx.psu.edu at 11/05/2021 18:27:13 using the Galaxy Tool Factory.--> <description>positional reverse</description> <requirements> <requirement type="package">python</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal"/> </stdio> <version_command><![CDATA[echo "0.01"]]></version_command> <command><![CDATA[python $runme $input $output2]]></command> <configfiles> <configfile name="runme"><![CDATA[#raw import sys; inp = sys.argv[1]; outp = sys.argv[2]; inlist = open(inp,'r').readlines(); o = open(outp,'w'); rs = [''.join(list(reversed(x.rstrip()))) for x in inlist]; o.write('\n'.join(rs)); o.close() #end raw]]></configfile> </configfiles> <inputs> <param name="input" type="data" optional="false" label="input" help="help" format="txt" multiple="false"/> </inputs> <outputs> <data name="output2" format="txt" label="output2" hidden="false"/> </outputs> <tests> <test> <output name="output2" value="output2_sample" compare="diff" lines_diff="0"/> <param name="input" value="input_sample"/> </test> </tests> <help><![CDATA[ help text goes here ------ Script:: import sys; inp = sys.argv[1]; outp = sys.argv[2]; inlist = open(inp,'r').readlines(); o = open(outp,'w'); rs = [''.join(list(reversed(x.rstrip()))) for x in inlist]; o.write('\n'.join(rs)); o.close() ]]></help> <citations> <citation type="doi">10.1093/bioinformatics/bts573</citation> </citations> </tool>