diff toolfactory/install_tf_demos.py @ 4:2a46da701dde draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolfactory/install_tf_demos.py	Mon Apr 26 05:25:26 2021 +0000
@@ -0,0 +1,42 @@
+import argparse
+import urllib.request
+
+from bioblend import galaxy
+
+WF = "https://drive.google.com/uc?export=download&id=13xE8o7tucHGNA0qYkEP98FfUGl2wdOU5"
+HIST = (
+    "https://drive.google.com/uc?export=download&id=1V0ZN9ZBuqcGJvt2AP7s3g0q11uYEhdDB"
+)
+WF_FILE = "tf_workflow.ga"
+HIST_FILE = "tf_history.tgz"
+
+
+def _parser():
+    parser = argparse.ArgumentParser()
+    parser.add_argument(
+        "-g", "--galaxy", help="URL of target galaxy", default="http://localhost:9090"
+    )
+    parser.add_argument("-a", "--key", help="Galaxy admin key", default=None)
+    return parser
+
+
+def main():
+    """
+    load the planemo tool_factory demonstration history and tool generating workflow
+    fails in planemo served galaxies because there seems to be no user in trans?
+    """
+    args = _parser().parse_args()
+    urllib.request.urlretrieve(WF, WF_FILE)
+    urllib.request.urlretrieve(HIST, HIST_FILE)
+    assert args.key, "Need an administrative key for the target Galaxy supplied please"
+    gi = galaxy.GalaxyInstance(
+        url=args.galaxy, key=args.key, email="[e-mail]"
+    )
+    x = gi.workflows.import_workflow_from_local_path(WF_FILE, publish=True)
+    print(f"installed {WF_FILE} Returned = {x}\n")
+    x = gi.histories.import_history(file_path=HIST_FILE)
+    print(f"installed {HIST_FILE} Returned = {x}\n")
+
+
+if __name__ == "__main__":
+    main()