diff toolfactory/install-history.py @ 6:efefe43f23c8 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/toolfactory/install-history.py	Fri Apr 30 02:10:32 2021 +0000
@@ -0,0 +1,41 @@
+import argparse
+import os
+
+
+from bioblend import galaxy
+
+
+def _parser():
+    parser = argparse.ArgumentParser()
+    parser.add_argument("-g", "--galaxy", help='URL of target galaxy')
+    parser.add_argument("-p", "--password", help='Galaxy admin password')
+    parser.add_argument("-e", "--email", help='Galaxy admin email')
+    parser.add_argument("-a", "--key", help='Galaxy admin key', default=None)
+    parser.add_argument("-i", "--history_path", help='Path to history gz files to be loaded')
+    return parser
+
+def main():
+    """
+    load a folder of histories or a single gz
+    """
+    args = _parser().parse_args()
+    if args.key:
+        gi = galaxy.GalaxyInstance(url=args.galaxy, key=args.key)
+    else:
+        gi = galaxy.GalaxyInstance(url=args.galaxy, email=args.email, password=args.password)
+    hdir = args.history_path
+    # h = gi.histories.get_most_recently_used_history()
+    if os.path.isdir(hdir):
+        for fp in os.listdir(hdir):
+            hp = os.path.join(hdir,fp)
+            if os.path.isfile(hp):
+                x = gi.histories.import_history(file_path=hp, url=None)
+                print('installed ',hp,'res=',x)
+    else:
+        x = gi.histories.import_history(file_path=hdir, url=None)
+        print('installed',hdir,'res=',x)
+
+
+if __name__ == "__main__":
+    main()
+