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changeset 3:1ecec9b9dde7 draft default tip

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Uploaded
author fwuennemann
date Sat, 01 May 2021 16:20:44 +0000
parents 4da457a2c5dc
children
files genap2_kb_python/kb_count.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/genap2_kb_python/kb_count.xml	Tue Apr 20 21:51:26 2021 +0000
+++ b/genap2_kb_python/kb_count.xml	Sat May 01 16:20:44 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="kb_python" name="kb_python" version="@VERSION@+galaxy1">
+<tool id="kb_python" name="kb_python" version="@VERSION@+galaxy2">
 	<description>performs gene and feature quantification on single-cell sequencing data.</description>
 	<macros>
 		<import>macros.xml</import>
@@ -37,7 +37,7 @@
 					-c2 ./index/intron_t2c.txt
 					--workflow $workflow
 				#end if
-				#if $workflow != "kite":
+				#if $workflow != "kite" and $workflow != "kite:10xFB":
 					'${refTranscriptSource.s_index.genomic_fasta}'
 					'${refTranscriptSource.s_index.genomic_gtf}'
 				#else:
@@ -76,6 +76,7 @@
 			<option value="lamanno">lamanno</option>
 			<option value="nucleus">nucleus</option>
 			<option value="kite">kite</option>
+			<option value="kite:10xFB">kite:10xFB (CITe-seq with Feature barcoding)</option>
 		</param>
 		<expand macro="index"/>
 		<param name="technology" label="Select the scRNA-seq technology:" type="select" multiple="false" format="text" help="Choose the scRNA-seq technology used to generate the fastq data.">