Mercurial > repos > galaxy-australia > alphafold2
comparison alphafold.xml @ 17:5b85006245f3 draft
planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 2e1eba8094c506a99a844546e8343849d3cef694
| author | galaxy-australia |
|---|---|
| date | Wed, 31 May 2023 01:30:22 +0000 |
| parents | f9eb041c518c |
| children | e4a053d67e24 |
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| 16:f9eb041c518c | 17:5b85006245f3 |
|---|---|
| 1 <tool id="alphafold" name="Alphafold 2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> | 1 <tool id="alphafold" name="Alphafold 2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> |
| 2 <description> - AI-guided 3D structural prediction of proteins</description> | 2 <description> - AI-guided 3D structural prediction of proteins</description> |
| 3 <macros> | 3 <macros> |
| 4 <token name="@TOOL_VERSION@">2.3.1</token> | 4 <token name="@TOOL_VERSION@">2.3.1</token> |
| 5 <token name="@TOOL_MINOR_VERSION@">2.3</token> | 5 <token name="@TOOL_MINOR_VERSION@">2.3</token> |
| 6 <token name="@VERSION_SUFFIX@">2</token> | 6 <token name="@VERSION_SUFFIX@">3</token> |
| 7 <import>macro_output.xml</import> | 7 <import>macro_output.xml</import> |
| 8 <import>macro_test_output.xml</import> | 8 <import>macro_test_output.xml</import> |
| 9 </macros> | 9 </macros> |
| 10 <edam_topics> | 10 <edam_topics> |
| 11 <edam_topic>topic_0082</edam_topic> | 11 <edam_topic>topic_0082</edam_topic> |
| 17 <xref type="bio.tools">alphafold_2</xref> | 17 <xref type="bio.tools">alphafold_2</xref> |
| 18 </xrefs> | 18 </xrefs> |
| 19 <requirements> | 19 <requirements> |
| 20 <container type="docker">neoformit/alphafold:v2.3.1_2</container> | 20 <container type="docker">neoformit/alphafold:v2.3.1_2</container> |
| 21 </requirements> | 21 </requirements> |
| 22 <required_files> | |
| 23 <include path="scripts/outputs.py" /> | |
| 24 <include path="scripts/validate_fasta.py" /> | |
| 25 <include path="alphafold.html" /> | |
| 26 </required_files> | |
| 22 <command detect_errors="exit_code"><![CDATA[ | 27 <command detect_errors="exit_code"><![CDATA[ |
| 23 | 28 |
| 24 ## Developers: to test with mock alphafold run, set `export PLANEMO_TESTING=1` | 29 ## Developers: to test with mock alphafold run, set `export PLANEMO_TESTING=1` |
| 25 ## in planemo's gx_venv_n/bin/activate script. AlphaFold outputs will be copied | 30 ## in planemo's gx_venv_n/bin/activate script. AlphaFold outputs will be copied |
| 26 ## from the test-data directory instead of running the tool. | 31 ## from the test-data directory instead of running the tool. |