Mercurial > repos > galaxy-australia > alphafold2
comparison docker/README.md @ 1:6c92e000d684 draft
"planemo upload for repository https://github.com/usegalaxy-au/galaxy-local-tools commit a510e97ebd604a5e30b1f16e5031f62074f23e86"
| author | galaxy-australia |
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| date | Tue, 01 Mar 2022 02:53:05 +0000 |
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| 0:7ae9d78b06f5 | 1:6c92e000d684 |
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| 1 # What is this? | |
| 2 | |
| 3 These are `alphafold` git repos copied from: | |
| 4 - the `clairemcwhite/alphafold` docker container (originates from a fork/branch https://github.com/deisseroth-lab/alphafold/tree/cudnn-runtime) | |
| 5 - The upstream https://github.com/deepmind/alphafold | |
| 6 | |
| 7 ### Diffs | |
| 8 - According to [the closed pull request](https://github.com/deepmind/alphafold/pull/36), the main diff is updates to Dockerfile Cuda deps in the fork | |
| 9 - These issues have since been resolved in the upstream | |
| 10 - Can probably copy the new repo into the image in a new Dockerfile `FROM clairemcwhite/alphafold` | |
| 11 - And hope that alphafold on pulsar can work with the new container! | |
| 12 (There were lots of dependency issues...) |