Mercurial > repos > galaxy-australia > alphafold2
diff alphafold.xml @ 7:eb085b3dbaf8 draft
"planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8d9f0ae6af9e8d9313c6cdcc551b24c6c44ae341"
author | galaxy-australia |
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date | Tue, 19 Apr 2022 00:39:29 +0000 |
parents | 04e95886cf24 |
children | ca90d17ff51b |
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--- a/alphafold.xml Mon Apr 04 01:46:22 2022 +0000 +++ b/alphafold.xml Tue Apr 19 00:39:29 2022 +0000 @@ -195,17 +195,6 @@ Proteins associate in many biological processes, including intracellular signalling pathways and protein complex formation. To predict these interactions, other programs may ingest 3D models predicted by AlphaFold. Proprietary softwares include `GOLD <https://www.ccdc.cam.ac.uk/solutions/csd-discovery/components/gold/>`_ and `SeeSAR <https://www.biosolveit.de/SeeSAR>`_, but many `free and open-source options <https://en.wikipedia.org/wiki/List_of_protein-ligand_docking_software>`_ are available such as `AutoDock <https://autodock.scripps.edu/>`_ and `SwissDock <http://www.swissdock.ch/>`_. - *Expected run times* - - .. image:: https://github.com/usegalaxy-au/galaxy-local-tools/blob/1a8d3e8daa7ccc5a345ca377697735ab95ed0666/tools/alphafold/static/img/alphafold_runtime_graph.png?raw=true - :height: 520 - :alt: Run time graph - - | - | In general, we observe a quadratic relationship between sequence length and time to fold. - | Once your job begins, a sequence of 50aa will take approximately 1hr to complete, while a sequence of 2000aa will take about 18hrs. - | - **Input** *Amino acid sequence*