Mercurial > repos > galaxy-australia > cactus_export
comparison README.rst @ 0:c18157c68134 draft
"planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 8f8363625623f2ff3f04d12d227673ac134eba24"
| author | galaxy-australia |
|---|---|
| date | Mon, 04 Apr 2022 06:26:16 +0000 |
| parents | |
| children | 2e093badc689 |
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| 1 Cactus | |
| 2 ====== | |
| 3 | |
| 4 This suite contains a wrapper for the | |
| 5 `Cactus <github.com/comparativeGenomicsToolkit/cactus>`__ whole-genome | |
| 6 aligner and another wrapper for exporting the data it generates. | |
| 7 | |
| 8 Requirements | |
| 9 ------------ | |
| 10 | |
| 11 The developers provide an official Docker container. However, the Docker | |
| 12 container won’t run unless ``/etc/passwd`` is mounted (`see this | |
| 13 issue <https://github.com/ComparativeGenomicsToolkit/cactus/issues/677>`__). | |
| 14 Because of this, it is recommended to run Cactus using Singularity. | |
| 15 | |
| 16 Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM | |
| 17 for a progressive alignment of three chromosome-level, 150 megabase | |
| 18 genomes. |