annotate macros.xml @ 7:34e128a6a6ed draft default tip

planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado commit 97793e41864a750b1c18c80b858c118e43ae8d97

<macros>
    <!-- UPDATING: pull the latest container and check the version. Update both tokens. You MUST
    also update the model list. See README.md for more.  -->
    <token name="@VERSION@">0.9.5+bd7fb217</token>
    <token name="@CONTAINER_HASH@">268dcb4cd02093e75cdc58821f8b93719c4255ed</token>
    <xml name="requirements">
        <requirements>
            <container type="docker">nanoporetech/dorado:sha@CONTAINER_HASH@</container>
        </requirements>
    </xml>
    <xml name="xrefs">
        <xrefs>
            <xref type="bio.tools">dorado</xref>
        </xrefs>
    </xml>
    <xml name="citation">
        <citations>
            <citation type="bibtex">
                @misc{dorado,
                title = {Dorado},
                author = {{Oxford Nanopore}},
                year = {2024},
                url = {https://github.com/nanoporetech/dorado/},
                }
            </citation>
        </citations>
    </xml>
    <xml name="model_param">
        <param name="model" type="select" label="Basecalling model. See the Help section for info on model names.">
            <options from_data_table="dorado_models">
                <!-- only allow models that shipped in this container -->
                <filter type="static_value" column="1" value="@CONTAINER_HASH@"/>
            </options>
        </param>
    </xml>
    <xml name="barcode_kits">
        <option value="EXP-NBD103">EXP-NBD103</option>
        <option value="EXP-NBD104">EXP-NBD104</option>
        <option value="EXP-NBD114-24">EXP-NBD114-24</option>
        <option value="EXP-NBD114">EXP-NBD114</option>
        <option value="EXP-NBD196">EXP-NBD196</option>
        <option value="EXP-PBC001">EXP-PBC001</option>
        <option value="EXP-PBC096">EXP-PBC096</option>
        <option value="SQK-16S024">SQK-16S024</option>
        <option value="SQK-16S114-24">SQK-16S114-24</option>
        <option value="SQK-LWB001">SQK-LWB001</option>
        <option value="SQK-MAB114-24">SQK-MAB114-24</option>
        <option value="SQK-MLK111-96-XL">SQK-MLK111-96-XL</option>
        <option value="SQK-MLK114-96-XL">SQK-MLK114-96-XL</option>
        <option value="SQK-NBD111-24">SQK-NBD111-24</option>
        <option value="SQK-NBD111-96">SQK-NBD111-96</option>
        <option value="SQK-NBD114-24">SQK-NBD114-24</option>
        <option value="SQK-NBD114-96">SQK-NBD114-96</option>
        <option value="SQK-PBK004">SQK-PBK004</option>
        <option value="SQK-PCB109">SQK-PCB109</option>
        <option value="SQK-PCB110">SQK-PCB110</option>
        <option value="SQK-PCB111-24">SQK-PCB111-24</option>
        <option value="SQK-PCB114-24">SQK-PCB114-24</option>
        <option value="SQK-RAB201">SQK-RAB201</option>
        <option value="SQK-RAB204">SQK-RAB204</option>
        <option value="SQK-RBK001">SQK-RBK001</option>
        <option value="SQK-RBK004">SQK-RBK004</option>
        <option value="SQK-RBK110-96">SQK-RBK110-96</option>
        <option value="SQK-RBK111-24">SQK-RBK111-24</option>
        <option value="SQK-RBK111-96">SQK-RBK111-96</option>
        <option value="SQK-RBK114-24">SQK-RBK114-24</option>
        <option value="SQK-RBK114-96">SQK-RBK114-96</option>
        <option value="SQK-RLB001">SQK-RLB001</option>
        <option value="SQK-RPB004">SQK-RPB004</option>
        <option value="SQK-RPB114-24">SQK-RPB114-24</option>
        <option value="TWIST-16-UDI">TWIST-16-UDI</option>
        <option value="TWIST-96A-UDI">TWIST-96A-UDI</option>
        <option value="VSK-PTC001">VSK-PTC001</option>
        <option value="VSK-VMK001">VSK-VMK001</option>
        <option value="VSK-VMK004">VSK-VMK004</option>
        <option value="VSK-VPS001">VSK-VPS001</option>
    </xml>
    <xml name="sequencing_kits">
        <option value="SQK-16S024">SQK-16S024</option>
        <option value="SQK-16S114-24-260">SQK-16S114-24-260</option>
        <option value="SQK-16S114-24">SQK-16S114-24</option>
        <option value="SQK-APK114">SQK-APK114</option>
        <option value="SQK-CS9109">SQK-CS9109</option>
        <option value="SQK-DCS108">SQK-DCS108</option>
        <option value="SQK-DCS109">SQK-DCS109</option>
        <option value="SQK-LRK001">SQK-LRK001</option>
        <option value="SQK-LSK108">SQK-LSK108</option>
        <option value="SQK-LSK109-XL">SQK-LSK109-XL</option>
        <option value="SQK-LSK109">SQK-LSK109</option>
        <option value="SQK-LSK110-XL">SQK-LSK110-XL</option>
        <option value="SQK-LSK110">SQK-LSK110</option>
        <option value="SQK-LSK111-XL">SQK-LSK111-XL</option>
        <option value="SQK-LSK111">SQK-LSK111</option>
        <option value="SQK-LSK112-XL">SQK-LSK112-XL</option>
        <option value="SQK-LSK112">SQK-LSK112</option>
        <option value="SQK-LSK114-260">SQK-LSK114-260</option>
        <option value="SQK-LSK114-XL">SQK-LSK114-XL</option>
        <option value="SQK-LSK114" selected="true">SQK-LSK114</option>
        <option value="SQK-LWB001">SQK-LWB001</option>
        <option value="SQK-LWP001">SQK-LWP001</option>
        <option value="SQK-MLK111-96-XL">SQK-MLK111-96-XL</option>
        <option value="SQK-MLK114-96-XL-260">SQK-MLK114-96-XL-260</option>
        <option value="SQK-MLK114-96-XL">SQK-MLK114-96-XL</option>
        <option value="SQK-NBD111-24">SQK-NBD111-24</option>
        <option value="SQK-NBD111-96">SQK-NBD111-96</option>
        <option value="SQK-NBD112-24">SQK-NBD112-24</option>
        <option value="SQK-NBD112-96">SQK-NBD112-96</option>
        <option value="SQK-NBD114-24-260">SQK-NBD114-24-260</option>
        <option value="SQK-NBD114-24">SQK-NBD114-24</option>
        <option value="SQK-NBD114-96-260">SQK-NBD114-96-260</option>
        <option value="SQK-NBD114-96">SQK-NBD114-96</option>
        <option value="SQK-PBK004">SQK-PBK004</option>
        <option value="SQK-PCB109">SQK-PCB109</option>
        <option value="SQK-PCB110">SQK-PCB110</option>
        <option value="SQK-PCB111-24">SQK-PCB111-24</option>
        <option value="SQK-PCB114-24-260">SQK-PCB114-24-260</option>
        <option value="SQK-PCB114-24">SQK-PCB114-24</option>
        <option value="SQK-PCS108">SQK-PCS108</option>
        <option value="SQK-PCS109">SQK-PCS109</option>
        <option value="SQK-PCS111">SQK-PCS111</option>
        <option value="SQK-PCS114-260">SQK-PCS114-260</option>
        <option value="SQK-PCS114">SQK-PCS114</option>
        <option value="SQK-PSK004">SQK-PSK004</option>
        <option value="SQK-RAB201">SQK-RAB201</option>
        <option value="SQK-RAB204">SQK-RAB204</option>
        <option value="SQK-RAD002">SQK-RAD002</option>
        <option value="SQK-RAD003">SQK-RAD003</option>
        <option value="SQK-RAD004">SQK-RAD004</option>
        <option value="SQK-RAD112">SQK-RAD112</option>
        <option value="SQK-RAD114-260">SQK-RAD114-260</option>
        <option value="SQK-RAD114">SQK-RAD114</option>
        <option value="SQK-RAS201">SQK-RAS201</option>
        <option value="SQK-RBK001">SQK-RBK001</option>
        <option value="SQK-RBK004">SQK-RBK004</option>
        <option value="SQK-RBK110-96">SQK-RBK110-96</option>
        <option value="SQK-RBK111-24">SQK-RBK111-24</option>
        <option value="SQK-RBK111-96">SQK-RBK111-96</option>
        <option value="SQK-RBK114-24-260">SQK-RBK114-24-260</option>
        <option value="SQK-RBK114-24">SQK-RBK114-24</option>
        <option value="SQK-RBK114-96-260">SQK-RBK114-96-260</option>
        <option value="SQK-RBK114-96">SQK-RBK114-96</option>
        <option value="SQK-RLB001">SQK-RLB001</option>
        <option value="SQK-RLI001">SQK-RLI001</option>
        <option value="SQK-RNA001">SQK-RNA001</option>
        <option value="SQK-RNA002">SQK-RNA002</option>
        <option value="SQK-RNA004-XL">SQK-RNA004-XL</option>
        <option value="SQK-RNA004">SQK-RNA004</option>
        <option value="SQK-RPB004">SQK-RPB004</option>
        <option value="SQK-RPB114-24-260">SQK-RPB114-24-260</option>
        <option value="SQK-RPB114-24">SQK-RPB114-24</option>
        <option value="SQK-ULK001">SQK-ULK001</option>
        <option value="SQK-ULK114-260">SQK-ULK114-260</option>
        <option value="SQK-ULK114">SQK-ULK114</option>
        <option value="VSK-PTC001">VSK-PTC001</option>
        <option value="VSK-VBK001">VSK-VBK001</option>
        <option value="VSK-VMK001">VSK-VMK001</option>
        <option value="VSK-VMK004">VSK-VMK004</option>
        <option value="VSK-VPS001">VSK-VPS001</option>
        <option value="VSK-VSK001">VSK-VSK001</option>
        <option value="VSK-VSK003">VSK-VSK003</option>
        <option value="VSK-VSK004">VSK-VSK004</option>
    </xml>
</macros>