comparison dorado.xml @ 1:fc5b6491cf78 draft

planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/main/tools/dorado commit c42b6e3fd2cf6d26e231645a9e8a2986503279e2

0:63d8ecfcfab1

<tool id="dorado" name="Dorado" version="@VERSION@+galaxy0" python_template_version="3.5" profile="21.05">
    <description>basecaller for raw Oxford Nanopore data</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="xrefs"/>

calls.bam 
> summary.tsv

    ]]></command>
    <inputs>
        <!-- FIXME: add pod5 datatype to Galaxy and change here.
        https://github.com/galaxyproject/galaxy/pull/18419 -->
        <param name="pod5_file" type="data" format="binary" label="Raw pod5 file" help="Only pod5 is supported. You can convert fast5 to pod5 with the fast5 to pod5 tool."/>
        <param name="model" type="select" label="Basecalling model. See the Help section for info on model names.">
            <options from_data_table="dorado_models">
                <!-- only allow models that shipped in this container -->
                <filter type="static_value" column="1" value="@CONTAINER_HASH@"/>
            </options>

                    <has_size size="10000" delta="1000"/>
                </assert_contents>
            </output>
            <output name="out_tsv" ftype="tsv">
                <assert_contents>
                    <has_size size="1103e241-dd7f-43bc-ae19-9a3c6326ad83"/>
                    <has_text text="SQK-RBK114-96_barcode04"/>
                </assert_contents>
            </output>
        </test>
    </tests>

1:fc5b6491cf78

<tool id="dorado" name="Dorado" version="@VERSION@+galaxy0" python_template_version="3.5" profile="24.1">
    <description>basecaller for raw Oxford Nanopore data</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="xrefs"/>

calls.bam 
> summary.tsv

    ]]></command>
    <inputs>
        <param name="pod5_file" type="data" format="pod5" label="Raw pod5 file" help="Only pod5 is supported. You can convert fast5 to pod5 with the fast5 to pod5 tool."/>
        <param name="model" type="select" label="Basecalling model. See the Help section for info on model names.">
            <options from_data_table="dorado_models">
                <!-- only allow models that shipped in this container -->
                <filter type="static_value" column="1" value="@CONTAINER_HASH@"/>
            </options>

                    <has_size size="10000" delta="1000"/>
                </assert_contents>
            </output>
            <output name="out_tsv" ftype="tsv">
                <assert_contents>
                    <has_text text="1103e241-dd7f-43bc-ae19-9a3c6326ad83"/>
                    <has_text text="SQK-RBK114-96_barcode04"/>
                </assert_contents>
            </output>
        </test>
    </tests>