diff dorado.xml @ 7:34e128a6a6ed draft default tip

planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado commit 97793e41864a750b1c18c80b858c118e43ae8d97

--- a/dorado.xml	Tue Apr 15 07:04:29 2025 +0000
+++ b/dorado.xml	Mon Jun 23 03:09:42 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="dorado" name="Dorado" version="@VERSION@+galaxy0" python_template_version="3.5" profile="24.1">
+<tool id="dorado" name="Dorado" version="@VERSION@+galaxy1" python_template_version="3.5" profile="24.1">
     <description>basecaller for raw Oxford Nanopore data</description>
     <macros>
         <import>macros.xml</import>
@@ -29,12 +29,7 @@
     ]]></command>
     <inputs>
         <param name="pod5_file" type="data" format="pod5" label="Raw pod5 file" help="Only pod5 is supported. You can convert fast5 to pod5 with the fast5 to pod5 tool."/>
-        <param name="model" type="select" label="Basecalling model. See the Help section for info on model names.">
-            <options from_data_table="dorado_models">
-                <!-- only allow models that shipped in this container -->
-                <filter type="static_value" column="1" value="@CONTAINER_HASH@"/>
-            </options>
-        </param>
+        <expand macro="model_param"/>
         <param type="select" argument="--trim" label="DNA adapter and primer trimming" help="Detect and remove any adapter and/or primer sequences from the beginning and end of DNA reads. Note that if you intend to demultiplex the reads, trimming adapters and primers could interfere with correct demultiplexing.">
             <option value="all" selected="true">Any. Trim any detected adapters or primers.</option>
             <option value="primers"> Primers. Trim any detected adapters or primers, but if barcoding is enabled the barcode sequences will not be trimmed.</option>
@@ -43,7 +38,7 @@
         </param>
         <!-- dev note: the barcode kits are hardcoded in https://github.com/nanoporetech/dorado/blob/release-v0.9/dorado/utils/barcode_kits.cpp -->
         <param type="select" argument="--kit-name" optional="true" label="Enable barcoding with the selected kit name." help="Reads are classified into their barcode groups during basecalling. The classification will be reflected in the read group name as well as in the BC tag of the output record.">
-            <expand macro="barcode_kits" />
+            <expand macro="barcode_kits"/>
         </param>
     </inputs>
     <outputs>