Mercurial > repos > galaxy-australia > dorado

diff macros.xml @ 6:5e67ea368004 draft default tip

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planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado commit 4e9b34685eeea001562ec29e1f10f5ee2eeca19c
author galaxy-australia
date Tue, 15 Apr 2025 07:04:29 +0000
parents c2a23340f233
children
line wrap: on
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--- a/macros.xml	Mon Nov 11 03:06:35 2024 +0000
+++ b/macros.xml	Tue Apr 15 07:04:29 2025 +0000
@@ -1,7 +1,8 @@
 <macros>
-    <!-- UPDATING: pull the latest container and check the version. Update both tokens. You MUST also update the model list. See README.md for more.  -->
-    <token name="@VERSION@">0.8.2+6b413c9</token>
-    <token name="@CONTAINER_HASH@">ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29</token>
+    <!-- UPDATING: pull the latest container and check the version. Update both tokens. You MUST
+    also update the model list. See README.md for more.  -->
+    <token name="@VERSION@">0.9.5+bd7fb217</token>
+    <token name="@CONTAINER_HASH@">268dcb4cd02093e75cdc58821f8b93719c4255ed</token>
     <xml name="requirements">
         <requirements>
             <container type="docker">nanoporetech/dorado:sha@CONTAINER_HASH@</container>
@@ -16,12 +17,139 @@
         <citations>
             <citation type="bibtex">
                 @misc{dorado,
-                    title = {Dorado},
-                    author = {{Oxford Nanopore}},
-                    year = {2024},
-                    url = {https://github.com/nanoporetech/dorado/},
-                    }
+                title = {Dorado},
+                author = {{Oxford Nanopore}},
+                year = {2024},
+                url = {https://github.com/nanoporetech/dorado/},
+                }
             </citation>
         </citations>
     </xml>
+    <xml name="barcode_kits">
+        <option value="EXP-NBD103">EXP-NBD103</option>
+        <option value="EXP-NBD104">EXP-NBD104</option>
+        <option value="EXP-NBD114-24">EXP-NBD114-24</option>
+        <option value="EXP-NBD114">EXP-NBD114</option>
+        <option value="EXP-NBD196">EXP-NBD196</option>
+        <option value="EXP-PBC001">EXP-PBC001</option>
+        <option value="EXP-PBC096">EXP-PBC096</option>
+        <option value="SQK-16S024">SQK-16S024</option>
+        <option value="SQK-16S114-24">SQK-16S114-24</option>
+        <option value="SQK-LWB001">SQK-LWB001</option>
+        <option value="SQK-MAB114-24">SQK-MAB114-24</option>
+        <option value="SQK-MLK111-96-XL">SQK-MLK111-96-XL</option>
+        <option value="SQK-MLK114-96-XL">SQK-MLK114-96-XL</option>
+        <option value="SQK-NBD111-24">SQK-NBD111-24</option>
+        <option value="SQK-NBD111-96">SQK-NBD111-96</option>
+        <option value="SQK-NBD114-24">SQK-NBD114-24</option>
+        <option value="SQK-NBD114-96">SQK-NBD114-96</option>
+        <option value="SQK-PBK004">SQK-PBK004</option>
+        <option value="SQK-PCB109">SQK-PCB109</option>
+        <option value="SQK-PCB110">SQK-PCB110</option>
+        <option value="SQK-PCB111-24">SQK-PCB111-24</option>
+        <option value="SQK-PCB114-24">SQK-PCB114-24</option>
+        <option value="SQK-RAB201">SQK-RAB201</option>
+        <option value="SQK-RAB204">SQK-RAB204</option>
+        <option value="SQK-RBK001">SQK-RBK001</option>
+        <option value="SQK-RBK004">SQK-RBK004</option>
+        <option value="SQK-RBK110-96">SQK-RBK110-96</option>
+        <option value="SQK-RBK111-24">SQK-RBK111-24</option>
+        <option value="SQK-RBK111-96">SQK-RBK111-96</option>
+        <option value="SQK-RBK114-24">SQK-RBK114-24</option>
+        <option value="SQK-RBK114-96">SQK-RBK114-96</option>
+        <option value="SQK-RLB001">SQK-RLB001</option>
+        <option value="SQK-RPB004">SQK-RPB004</option>
+        <option value="SQK-RPB114-24">SQK-RPB114-24</option>
+        <option value="TWIST-16-UDI">TWIST-16-UDI</option>
+        <option value="TWIST-96A-UDI">TWIST-96A-UDI</option>
+        <option value="VSK-PTC001">VSK-PTC001</option>
+        <option value="VSK-VMK001">VSK-VMK001</option>
+        <option value="VSK-VMK004">VSK-VMK004</option>
+        <option value="VSK-VPS001">VSK-VPS001</option>
+    </xml>
+    <xml name="sequencing_kits">
+        <option value="SQK-16S024">SQK-16S024</option>
+        <option value="SQK-16S114-24-260">SQK-16S114-24-260</option>
+        <option value="SQK-16S114-24">SQK-16S114-24</option>
+        <option value="SQK-APK114">SQK-APK114</option>
+        <option value="SQK-CS9109">SQK-CS9109</option>
+        <option value="SQK-DCS108">SQK-DCS108</option>
+        <option value="SQK-DCS109">SQK-DCS109</option>
+        <option value="SQK-LRK001">SQK-LRK001</option>
+        <option value="SQK-LSK108">SQK-LSK108</option>
+        <option value="SQK-LSK109-XL">SQK-LSK109-XL</option>
+        <option value="SQK-LSK109">SQK-LSK109</option>
+        <option value="SQK-LSK110-XL">SQK-LSK110-XL</option>
+        <option value="SQK-LSK110">SQK-LSK110</option>
+        <option value="SQK-LSK111-XL">SQK-LSK111-XL</option>
+        <option value="SQK-LSK111">SQK-LSK111</option>
+        <option value="SQK-LSK112-XL">SQK-LSK112-XL</option>
+        <option value="SQK-LSK112">SQK-LSK112</option>
+        <option value="SQK-LSK114-260">SQK-LSK114-260</option>
+        <option value="SQK-LSK114-XL">SQK-LSK114-XL</option>
+        <option value="SQK-LSK114" selected="true">SQK-LSK114</option>
+        <option value="SQK-LWB001">SQK-LWB001</option>
+        <option value="SQK-LWP001">SQK-LWP001</option>
+        <option value="SQK-MLK111-96-XL">SQK-MLK111-96-XL</option>
+        <option value="SQK-MLK114-96-XL-260">SQK-MLK114-96-XL-260</option>
+        <option value="SQK-MLK114-96-XL">SQK-MLK114-96-XL</option>
+        <option value="SQK-NBD111-24">SQK-NBD111-24</option>
+        <option value="SQK-NBD111-96">SQK-NBD111-96</option>
+        <option value="SQK-NBD112-24">SQK-NBD112-24</option>
+        <option value="SQK-NBD112-96">SQK-NBD112-96</option>
+        <option value="SQK-NBD114-24-260">SQK-NBD114-24-260</option>
+        <option value="SQK-NBD114-24">SQK-NBD114-24</option>
+        <option value="SQK-NBD114-96-260">SQK-NBD114-96-260</option>
+        <option value="SQK-NBD114-96">SQK-NBD114-96</option>
+        <option value="SQK-PBK004">SQK-PBK004</option>
+        <option value="SQK-PCB109">SQK-PCB109</option>
+        <option value="SQK-PCB110">SQK-PCB110</option>
+        <option value="SQK-PCB111-24">SQK-PCB111-24</option>
+        <option value="SQK-PCB114-24-260">SQK-PCB114-24-260</option>
+        <option value="SQK-PCB114-24">SQK-PCB114-24</option>
+        <option value="SQK-PCS108">SQK-PCS108</option>
+        <option value="SQK-PCS109">SQK-PCS109</option>
+        <option value="SQK-PCS111">SQK-PCS111</option>
+        <option value="SQK-PCS114-260">SQK-PCS114-260</option>
+        <option value="SQK-PCS114">SQK-PCS114</option>
+        <option value="SQK-PSK004">SQK-PSK004</option>
+        <option value="SQK-RAB201">SQK-RAB201</option>
+        <option value="SQK-RAB204">SQK-RAB204</option>
+        <option value="SQK-RAD002">SQK-RAD002</option>
+        <option value="SQK-RAD003">SQK-RAD003</option>
+        <option value="SQK-RAD004">SQK-RAD004</option>
+        <option value="SQK-RAD112">SQK-RAD112</option>
+        <option value="SQK-RAD114-260">SQK-RAD114-260</option>
+        <option value="SQK-RAD114">SQK-RAD114</option>
+        <option value="SQK-RAS201">SQK-RAS201</option>
+        <option value="SQK-RBK001">SQK-RBK001</option>
+        <option value="SQK-RBK004">SQK-RBK004</option>
+        <option value="SQK-RBK110-96">SQK-RBK110-96</option>
+        <option value="SQK-RBK111-24">SQK-RBK111-24</option>
+        <option value="SQK-RBK111-96">SQK-RBK111-96</option>
+        <option value="SQK-RBK114-24-260">SQK-RBK114-24-260</option>
+        <option value="SQK-RBK114-24">SQK-RBK114-24</option>
+        <option value="SQK-RBK114-96-260">SQK-RBK114-96-260</option>
+        <option value="SQK-RBK114-96">SQK-RBK114-96</option>
+        <option value="SQK-RLB001">SQK-RLB001</option>
+        <option value="SQK-RLI001">SQK-RLI001</option>
+        <option value="SQK-RNA001">SQK-RNA001</option>
+        <option value="SQK-RNA002">SQK-RNA002</option>
+        <option value="SQK-RNA004-XL">SQK-RNA004-XL</option>
+        <option value="SQK-RNA004">SQK-RNA004</option>
+        <option value="SQK-RPB004">SQK-RPB004</option>
+        <option value="SQK-RPB114-24-260">SQK-RPB114-24-260</option>
+        <option value="SQK-RPB114-24">SQK-RPB114-24</option>
+        <option value="SQK-ULK001">SQK-ULK001</option>
+        <option value="SQK-ULK114-260">SQK-ULK114-260</option>
+        <option value="SQK-ULK114">SQK-ULK114</option>
+        <option value="VSK-PTC001">VSK-PTC001</option>
+        <option value="VSK-VBK001">VSK-VBK001</option>
+        <option value="VSK-VMK001">VSK-VMK001</option>
+        <option value="VSK-VMK004">VSK-VMK004</option>
+        <option value="VSK-VPS001">VSK-VPS001</option>
+        <option value="VSK-VSK001">VSK-VSK001</option>
+        <option value="VSK-VSK003">VSK-VSK003</option>
+        <option value="VSK-VSK004">VSK-VSK004</option>
+    </xml>
 </macros>