# HG changeset patch # User galaxy-australia # Date 1730690764 0 # Node ID 3479b06460a4807a8b1f4778f2aa8572829cc890 # Parent 1145758d2f0bb067cc903871af75a3ee4bd69380 planemo upload for repository https://github.com/usegalaxy-au/tools-au/tree/master/tools/dorado commit 8f48f7ee85162eeaa9c0247c7bb7d699f84d6ca7 diff -r 1145758d2f0b -r 3479b06460a4 test-data/FAL00375_473bf0ed_0.ten_reads.bam Binary file test-data/FAL00375_473bf0ed_0.ten_reads.bam has changed diff -r 1145758d2f0b -r 3479b06460a4 test-data/custom_primers.fasta.gz Binary file test-data/custom_primers.fasta.gz has changed diff -r 1145758d2f0b -r 3479b06460a4 test-data/dorado_trimming_test1.bam Binary file test-data/dorado_trimming_test1.bam has changed diff -r 1145758d2f0b -r 3479b06460a4 test-data/dorado_trimming_test1.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_trimming_test1.tsv Mon Nov 04 03:26:04 2024 +0000 @@ -0,0 +1,11 @@ +filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template barcode +reads.pod5 005cf7ae-4d74-42dd-ab96-9befed842822 473bf0edfc2f8f756173de35db5da9b6f6db4959 473 2 258.872 29.436 259.165 29.1435 14587 5.17895 unclassified +reads.pod5 0066800d-d191-4833-a495-cfe8b925aca0 473bf0edfc2f8f756173de35db5da9b6f6db4959 56 4 359.11 14.0378 359.11 14.0378 5111 9.1072 unclassified +reads.pod5 00777c4b-cbd6-4a79-8647-bbe5f5f3f3bf 473bf0edfc2f8f756173de35db5da9b6f6db4959 300 3 329.733 2.5165 329.766 2.484 1055 12.9149 unclassified +reads.pod5 002f231b-5d37-437f-a027-a2e8b872e73b 473bf0edfc2f8f756173de35db5da9b6f6db4959 118 3 534.745 19.5847 534.745 19.5847 8387 9.88254 unclassified +reads.pod5 000a9728-0a7c-4b64-9791-76bb30b63796 473bf0edfc2f8f756173de35db5da9b6f6db4959 105 4 331.319 3.27625 331.319 3.27625 1175 12.0328 unclassified +reads.pod5 0067486b-9f92-4849-8456-671463e64412 473bf0edfc2f8f756173de35db5da9b6f6db4959 84 4 164.018 2.453 164.018 2.453 885 12.399 unclassified +reads.pod5 009f5efd-de5d-4a7e-9d17-969c3996cbc8 473bf0edfc2f8f756173de35db5da9b6f6db4959 230 2 171.634 3.27475 171.634 3.27475 1232 13.6258 unclassified +reads.pod5 00aeb4ba-e404-49d2-97c5-8fcf22547f81 473bf0edfc2f8f756173de35db5da9b6f6db4959 51 4 297.891 50.1888 297.984 50.0962 19142 8.45178 unclassified +reads.pod5 0072b26f-f37c-4517-afa7-621543ac2187 473bf0edfc2f8f756173de35db5da9b6f6db4959 317 3 111.275 2.31875 111.275 2.31875 929 9.69614 unclassified +reads.pod5 00ad521b-b916-404f-a31d-a657f9aa7756 473bf0edfc2f8f756173de35db5da9b6f6db4959 365 2 566.263 23.6745 566.263 23.6745 10934 12.074 unclassified diff -r 1145758d2f0b -r 3479b06460a4 test-data/dorado_trimming_test2.bam Binary file test-data/dorado_trimming_test2.bam has changed diff -r 1145758d2f0b -r 3479b06460a4 test-data/dorado_trimming_test2.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_trimming_test2.tsv Mon Nov 04 03:26:04 2024 +0000 @@ -0,0 +1,11 @@ +filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template barcode +reads.pod5 00777c4b-cbd6-4a79-8647-bbe5f5f3f3bf 473bf0edfc2f8f756173de35db5da9b6f6db4959 300 3 329.733 2.5165 329.766 2.484 1055 12.9149 unclassified +reads.pod5 0072b26f-f37c-4517-afa7-621543ac2187 473bf0edfc2f8f756173de35db5da9b6f6db4959 317 3 111.275 2.31875 111.275 2.31875 929 9.69614 unclassified +reads.pod5 0067486b-9f92-4849-8456-671463e64412 473bf0edfc2f8f756173de35db5da9b6f6db4959 84 4 164.018 2.453 164.018 2.453 885 12.399 unclassified +reads.pod5 002f231b-5d37-437f-a027-a2e8b872e73b 473bf0edfc2f8f756173de35db5da9b6f6db4959 118 3 534.745 19.5847 534.745 19.5847 8387 9.88254 unclassified +reads.pod5 0066800d-d191-4833-a495-cfe8b925aca0 473bf0edfc2f8f756173de35db5da9b6f6db4959 56 4 359.11 14.0378 359.11 14.0378 5111 9.1072 unclassified +reads.pod5 009f5efd-de5d-4a7e-9d17-969c3996cbc8 473bf0edfc2f8f756173de35db5da9b6f6db4959 230 2 171.634 3.27475 171.634 3.27475 1232 13.6258 unclassified +reads.pod5 005cf7ae-4d74-42dd-ab96-9befed842822 473bf0edfc2f8f756173de35db5da9b6f6db4959 473 2 258.872 29.436 259.165 29.1435 14587 5.17895 unclassified +reads.pod5 000a9728-0a7c-4b64-9791-76bb30b63796 473bf0edfc2f8f756173de35db5da9b6f6db4959 105 4 331.319 3.27625 331.319 3.27625 1175 12.0328 unclassified +reads.pod5 00ad521b-b916-404f-a31d-a657f9aa7756 473bf0edfc2f8f756173de35db5da9b6f6db4959 365 2 566.263 23.6745 566.263 23.6745 10934 12.074 unclassified +reads.pod5 00aeb4ba-e404-49d2-97c5-8fcf22547f81 473bf0edfc2f8f756173de35db5da9b6f6db4959 51 4 297.891 50.1888 297.984 50.0962 19142 8.45178 unclassified diff -r 1145758d2f0b -r 3479b06460a4 test-data/dorado_trimming_test3.bam Binary file test-data/dorado_trimming_test3.bam has changed diff -r 1145758d2f0b -r 3479b06460a4 test-data/dorado_trimming_test3.tsv --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dorado_trimming_test3.tsv Mon Nov 04 03:26:04 2024 +0000 @@ -0,0 +1,2 @@ +filename read_id run_id channel mux start_time duration template_start template_duration sequence_length_template mean_qscore_template barcode + 2f707b6e-0060-4f33-9c92-a1230d26cb21 unknown 0 0 0 0 0 0 421 0 unclassified diff -r 1145758d2f0b -r 3479b06460a4 test-data/lsk109_single_read.fastqsanger.gz Binary file test-data/lsk109_single_read.fastqsanger.gz has changed